Gene annotation
Transcriptome id Sobic.010G250100.1
Synonym CIL, Sb10g028840
Functional annotation "CIL, CIA2 like (Chloroplast import apparatus)" (PubMedID : 28640841)
CCT motif family protein, expressed
UniProt A0A194YLD3
Pfam -
Panther DB PTHR31874 PTHR31874:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25990 : CCT motif family protein
RAP-DB (Rice) LOC_Os06g48610.1 : CCT motif family protein, expressed
MaizeGDB (Corn) Zm00025a023782 , Zm00025a041787 , Zm00025a018350
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G250100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
2 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
3 Sobic.003G222200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
5 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
6 Sobic.003G307900 BSD domain containing protein, expressed -
7 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
8 Sobic.006G109500 aldehyde dehydrogenase, putative, expressed K00130: betB, betaine-aldehyde dehydrogenase
9 Sobic.001G401900 wound-induced protein WI12, putative, expressed -
10 Sobic.001G199300 GIL1, putative, expressed -
11 Sobic.001G432300 imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed K01663: imidazole glycerol-phosphate synthase
12 Sobic.005G030100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2-isopropylmalate synthase B, putative, expressed K01649: leuA, 2-isopropylmalate synthase
13 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
14 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
15 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
16 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
17 Sobic.004G242000 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
18 Sobic.010G256200 expressed protein -
19 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
20 Sobic.003G086500 expressed protein -


Gene co-expression network
sample Sobic010G250100 Sobic010G250100 Sobic002G252900 Sobic002G252900 Sobic010G250100--Sobic002G252900 Sobic009G102900 Sobic009G102900 Sobic010G250100--Sobic009G102900 Sobic003G222200 Sobic003G222200 Sobic010G250100--Sobic003G222200 Sobic010G088300 Sobic010G088300 Sobic010G250100--Sobic010G088300 Sobic001G115500 Sobic001G115500 Sobic010G250100--Sobic001G115500 Sobic003G307900 Sobic003G307900 Sobic010G250100--Sobic003G307900 Sobic009G030400 Sobic009G030400 Sobic010G250100--Sobic009G030400 Sobic006G109500 Sobic006G109500 Sobic010G250100--Sobic006G109500 Sobic001G401900 Sobic001G401900 Sobic010G250100--Sobic001G401900 Sobic002G062500 Sobic002G062500 Sobic002G252900--Sobic002G062500 Sobic004G242000 Sobic004G242000 Sobic002G252900--Sobic004G242000 Sobic002G252900--Sobic009G030400 Sobic004G345100 Sobic004G345100 Sobic002G252900--Sobic004G345100 Sobic002G385300 Sobic002G385300 Sobic002G252900--Sobic002G385300 Sobic009G060400 Sobic009G060400 Sobic002G252900--Sobic009G060400 Sobic002G252900--Sobic010G250100 Sobic002G390400 Sobic002G390400 Sobic002G252900--Sobic002G390400 Sobic010G256200 Sobic010G256200 Sobic002G252900--Sobic010G256200 Sobic009G102900--Sobic001G115500 Sobic003G198300 Sobic003G198300 Sobic009G102900--Sobic003G198300 Sobic001G178400 Sobic001G178400 Sobic009G102900--Sobic001G178400 Sobic004G249300 Sobic004G249300 Sobic009G102900--Sobic004G249300 Sobic008G118500 Sobic008G118500 Sobic009G102900--Sobic008G118500 Sobic009G002000 Sobic009G002000 Sobic009G102900--Sobic009G002000 Sobic001G008500 Sobic001G008500 Sobic009G102900--Sobic001G008500 Sobic001G346300 Sobic001G346300 Sobic009G102900--Sobic001G346300 Sobic004G047200 Sobic004G047200 Sobic009G102900--Sobic004G047200 Sobic003G222200--Sobic010G250100 Sobic001G442700 Sobic001G442700 Sobic003G222200--Sobic001G442700 Sobic009G073400 Sobic009G073400 Sobic003G222200--Sobic009G073400 Sobic006G172200 Sobic006G172200 Sobic003G222200--Sobic006G172200 Sobic001G235700 Sobic001G235700 Sobic003G222200--Sobic001G235700 Sobic001G123100 Sobic001G123100 Sobic003G222200--Sobic001G123100 Sobic010G079100 Sobic010G079100 Sobic003G222200--Sobic010G079100 Sobic001G157600 Sobic001G157600 Sobic003G222200--Sobic001G157600 Sobic001G507000 Sobic001G507000 Sobic003G222200--Sobic001G507000 Sobic003G031200 Sobic003G031200 Sobic010G088300--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic010G088300--Sobic003G043400 Sobic001G199300 Sobic001G199300 Sobic010G088300--Sobic001G199300 Sobic001G434400 Sobic001G434400 Sobic010G088300--Sobic001G434400 Sobic002G423800 Sobic002G423800 Sobic010G088300--Sobic002G423800 Sobic004G137900 Sobic004G137900 Sobic010G088300--Sobic004G137900 Sobic004G204800 Sobic004G204800 Sobic010G088300--Sobic004G204800 Sobic002G044000 Sobic002G044000 Sobic010G088300--Sobic002G044000 Sobic003G126800 Sobic003G126800 Sobic010G088300--Sobic003G126800 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic001G115500--Sobic004G249300 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic003G083900 Sobic003G083900 Sobic003G307900--Sobic003G083900 Sobic003G307900--Sobic008G125000 Sobic004G133700 Sobic004G133700 Sobic003G307900--Sobic004G133700 Sobic001G370300 Sobic001G370300 Sobic003G307900--Sobic001G370300 Sobic006G087100 Sobic006G087100 Sobic003G307900--Sobic006G087100 Sobic004G057800 Sobic004G057800 Sobic003G307900--Sobic004G057800 Sobic001G285300 Sobic001G285300 Sobic003G307900--Sobic001G285300 Sobic005G187500 Sobic005G187500 Sobic003G307900--Sobic005G187500 Sobic007G010900 Sobic007G010900 Sobic003G307900--Sobic007G010900 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic002G312700 Sobic002G312700 Sobic006G109500--Sobic002G312700 Sobic002G271300 Sobic002G271300 Sobic006G109500--Sobic002G271300 Sobic003G161500 Sobic003G161500 Sobic006G109500--Sobic003G161500 Sobic007G172500 Sobic007G172500 Sobic006G109500--Sobic007G172500 Sobic010G090500 Sobic010G090500 Sobic006G109500--Sobic010G090500 Sobic009G079100 Sobic009G079100 Sobic006G109500--Sobic009G079100 Sobic006G109500--Sobic009G073400 Sobic008G043500 Sobic008G043500 Sobic006G109500--Sobic008G043500 Sobic003G132500 Sobic003G132500 Sobic006G109500--Sobic003G132500 Sobic001G396900 Sobic001G396900 Sobic001G401900--Sobic001G396900 Sobic004G243300 Sobic004G243300 Sobic001G401900--Sobic004G243300 Sobic009G148000 Sobic009G148000 Sobic001G401900--Sobic009G148000 Sobic005G165800 Sobic005G165800 Sobic001G401900--Sobic005G165800 Sobic001G401900--Sobic010G250100 Sobic001G401900--Sobic001G507000 Sobic005G138500 Sobic005G138500 Sobic001G401900--Sobic005G138500 Sobic005G068800 Sobic005G068800 Sobic001G401900--Sobic005G068800 Sobic006G034300 Sobic006G034300 Sobic001G401900--Sobic006G034300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.