Gene annotation
Transcriptome id Sobic.009G169100.1,Sobic.009G169100.2
Synonym Sb09g023070
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YZE6 , A0A1Z5R309
Pfam PF13920
Panther DB PTHR12313 PTHR12313:SF8
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58030 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g39380.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037768 , Zm00025a043949
Brachypodium KQK05811
Barley HORVU1Hr1G070620.4 , HORVU1Hr1G070620.5 , HORVU1Hr1G070620.6 , HORVU1Hr1G070620.1 , HORVU1Hr1G070620.2 , HORVU1Hr1G070620.3
Wheat -
Populus -


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cDNA sequences
Sobic.009G169100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
2 Sobic.008G111700 expressed protein -
3 Sobic.003G039200 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
4 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
5 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
6 Sobic.002G385300 helix-loop-helix DNA-binding domain containing protein, expressed -
7 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
8 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
9 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
10 Sobic.010G095700 DCN1-like protein 2, putative, expressed K17822: DCN1-like protein 1/2
11 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
12 Sobic.008G058700 metal cation transporter, putative, expressed -
13 Sobic.004G320100 expressed protein -
14 Sobic.006G120800 transglutaminase, putative, expressed -
15 Sobic.009G022100 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
16 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
17 Sobic.001G285300 expressed protein -
18 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
19 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
20 Sobic.002G359900 nuclear transport factor 2, putative, expressed -


Gene co-expression network
sample Sobic009G169100 Sobic009G169100 Sobic008G160500 Sobic008G160500 Sobic009G169100--Sobic008G160500 Sobic008G111700 Sobic008G111700 Sobic009G169100--Sobic008G111700 Sobic003G039200 Sobic003G039200 Sobic009G169100--Sobic003G039200 Sobic001G349400 Sobic001G349400 Sobic009G169100--Sobic001G349400 Sobic003G192000 Sobic003G192000 Sobic009G169100--Sobic003G192000 Sobic002G385300 Sobic002G385300 Sobic009G169100--Sobic002G385300 Sobic010G141600 Sobic010G141600 Sobic009G169100--Sobic010G141600 Sobic002G267400 Sobic002G267400 Sobic009G169100--Sobic002G267400 Sobic001G458200 Sobic001G458200 Sobic009G169100--Sobic001G458200 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic009G030400 Sobic009G030400 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic002G403200 Sobic002G403200 Sobic008G160500--Sobic002G403200 Sobic003G004500 Sobic003G004500 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic001G033400 Sobic001G033400 Sobic008G160500--Sobic001G033400 Sobic001G285300 Sobic001G285300 Sobic008G111700--Sobic001G285300 Sobic003G038600 Sobic003G038600 Sobic008G111700--Sobic003G038600 Sobic001G448200 Sobic001G448200 Sobic008G111700--Sobic001G448200 Sobic008G111700--Sobic001G349400 Sobic003G247900 Sobic003G247900 Sobic008G111700--Sobic003G247900 Sobic003G031200 Sobic003G031200 Sobic008G111700--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic008G111700--Sobic003G043400 Sobic006G094600 Sobic006G094600 Sobic008G111700--Sobic006G094600 Sobic006G261100 Sobic006G261100 Sobic008G111700--Sobic006G261100 Sobic002G044000 Sobic002G044000 Sobic003G039200--Sobic002G044000 Sobic003G039200--Sobic001G285300 Sobic003G039200--Sobic003G043400 Sobic001G506000 Sobic001G506000 Sobic003G039200--Sobic001G506000 Sobic001G532100 Sobic001G532100 Sobic003G039200--Sobic001G532100 Sobic009G201800 Sobic009G201800 Sobic003G039200--Sobic009G201800 Sobic007G152400 Sobic007G152400 Sobic003G039200--Sobic007G152400 Sobic008G058700 Sobic008G058700 Sobic003G039200--Sobic008G058700 Sobic003G039200--Sobic006G094600 Sobic001G349400--Sobic008G111700 Sobic001G349400--Sobic001G285300 Sobic003G434000 Sobic003G434000 Sobic001G349400--Sobic003G434000 Sobic002G051200 Sobic002G051200 Sobic001G349400--Sobic002G051200 Sobic003G024800 Sobic003G024800 Sobic001G349400--Sobic003G024800 Sobic006G143500 Sobic006G143500 Sobic001G349400--Sobic006G143500 Sobic009G036900 Sobic009G036900 Sobic001G349400--Sobic009G036900 Sobic001G127400 Sobic001G127400 Sobic001G349400--Sobic001G127400 Sobic003G420700 Sobic003G420700 Sobic001G349400--Sobic003G420700 Sobic003G192000--Sobic001G458200 Sobic003G407900 Sobic003G407900 Sobic003G192000--Sobic003G407900 Sobic003G192000--Sobic002G403200 Sobic003G192000--Sobic006G261100 Sobic010G253100 Sobic010G253100 Sobic003G192000--Sobic010G253100 Sobic003G192000--Sobic002G359900 Sobic003G192000--Sobic009G030400 Sobic002G276900 Sobic002G276900 Sobic003G192000--Sobic002G276900 Sobic010G095700 Sobic010G095700 Sobic003G192000--Sobic010G095700 Sobic002G390400 Sobic002G390400 Sobic002G385300--Sobic002G390400 Sobic002G252900 Sobic002G252900 Sobic002G385300--Sobic002G252900 Sobic002G385300--Sobic008G111700 Sobic008G116600 Sobic008G116600 Sobic002G385300--Sobic008G116600 Sobic001G498400 Sobic001G498400 Sobic002G385300--Sobic001G498400 Sobic002G385300--Sobic009G030400 Sobic002G385300--Sobic006G261100 Sobic001G135500 Sobic001G135500 Sobic002G385300--Sobic001G135500 Sobic002G062500 Sobic002G062500 Sobic002G385300--Sobic002G062500 Sobic010G141600--Sobic009G030400 Sobic002G208400 Sobic002G208400 Sobic010G141600--Sobic002G208400 Sobic009G002000 Sobic009G002000 Sobic010G141600--Sobic009G002000 Sobic006G193500 Sobic006G193500 Sobic010G141600--Sobic006G193500 Sobic001G373000 Sobic001G373000 Sobic010G141600--Sobic001G373000 Sobic001G115500 Sobic001G115500 Sobic010G141600--Sobic001G115500 Sobic001G013300 Sobic001G013300 Sobic010G141600--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic010G141600--Sobic009G113100 Sobic002G263200 Sobic002G263200 Sobic010G141600--Sobic002G263200 Sobic003G148900 Sobic003G148900 Sobic002G267400--Sobic003G148900 Sobic002G059000 Sobic002G059000 Sobic002G267400--Sobic002G059000 Sobic002G357900 Sobic002G357900 Sobic002G267400--Sobic002G357900 Sobic007G192100 Sobic007G192100 Sobic002G267400--Sobic007G192100 Sobic001G036700 Sobic001G036700 Sobic002G267400--Sobic001G036700 Sobic008G111800 Sobic008G111800 Sobic002G267400--Sobic008G111800 Sobic002G267400--Sobic003G062400 Sobic004G256300 Sobic004G256300 Sobic002G267400--Sobic004G256300 Sobic007G081900 Sobic007G081900 Sobic002G267400--Sobic007G081900 Sobic001G458200--Sobic003G192000 Sobic003G128300 Sobic003G128300 Sobic001G458200--Sobic003G128300 Sobic001G458200--Sobic001G532100 Sobic001G458200--Sobic002G359900 Sobic002G093900 Sobic002G093900 Sobic001G458200--Sobic002G093900 Sobic008G134900 Sobic008G134900 Sobic001G458200--Sobic008G134900 Sobic001G458200--Sobic003G148900 Sobic002G306600 Sobic002G306600 Sobic001G458200--Sobic002G306600 Sobic001G458200--Sobic002G044000
Octagon: transcription factors


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