Gene annotation
Transcriptome id Sobic.003G039200.1
Synonym UBC2, ATUBC2, Sb03g003510
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A1B6Q1B5
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF128
NCBI CDD KOG0419; Ubiquitin-protein ligase
KEGG Orthology K10573; UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02760 : ubiquiting-conjugating enzyme 2
RAP-DB (Rice) LOC_Os05g08960.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a041407
Brachypodium KQK20729 , KQK03078 , KQK20730 , KQK07181 , KQK12807
Barley HORVU3Hr1G020470.2 , HORVU5Hr1G104090.2 , HORVU3Hr1G020470.1
Wheat TraesCS3D02G114600 , TraesCS3D02G114600 , TraesCS3D02G114600 , TraesCS3B02G131500 , TraesCS3B02G131500 , TraesCS5B02G431100 , TraesCS5B02G431100 , TraesCS2A02G247700 , TraesCS2A02G247700 , TraesCS2A02G247700 , TraesCS2D02G248000 , TraesCS2D02G248000 , TraesCS2D02G248000 , TraesCS3A02G112600 , TraesCS5A02G429000 , TraesCS5A02G429000 , TraesCS2B02G270000 , TraesCS2B02G270000 , TraesCS2B02G270000 , TraesCS5D02G437100 , TraesCS5D02G437100
Populus -


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cDNA sequences
Sobic.003G039200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
2 Sobic.001G285300 expressed protein -
3 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
4 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
5 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
6 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
7 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
8 Sobic.008G058700 metal cation transporter, putative, expressed -
9 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
10 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
11 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
13 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
14 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
15 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
16 Sobic.008G111700 expressed protein -
17 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
18 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
19 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
20 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6


Gene co-expression network
sample Sobic003G039200 Sobic003G039200 Sobic002G044000 Sobic002G044000 Sobic003G039200--Sobic002G044000 Sobic001G285300 Sobic001G285300 Sobic003G039200--Sobic001G285300 Sobic003G043400 Sobic003G043400 Sobic003G039200--Sobic003G043400 Sobic001G506000 Sobic001G506000 Sobic003G039200--Sobic001G506000 Sobic001G532100 Sobic001G532100 Sobic003G039200--Sobic001G532100 Sobic009G201800 Sobic009G201800 Sobic003G039200--Sobic009G201800 Sobic007G152400 Sobic007G152400 Sobic003G039200--Sobic007G152400 Sobic008G058700 Sobic008G058700 Sobic003G039200--Sobic008G058700 Sobic006G094600 Sobic006G094600 Sobic003G039200--Sobic006G094600 Sobic002G044000--Sobic009G201800 Sobic003G358300 Sobic003G358300 Sobic002G044000--Sobic003G358300 Sobic009G070200 Sobic009G070200 Sobic002G044000--Sobic009G070200 Sobic002G044000--Sobic001G285300 Sobic006G143500 Sobic006G143500 Sobic002G044000--Sobic006G143500 Sobic004G032000 Sobic004G032000 Sobic002G044000--Sobic004G032000 Sobic001G126200 Sobic001G126200 Sobic002G044000--Sobic001G126200 Sobic002G044000--Sobic007G152400 Sobic002G386300 Sobic002G386300 Sobic002G044000--Sobic002G386300 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic001G285300--Sobic006G143500 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic003G420700 Sobic003G420700 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic001G487100 Sobic001G487100 Sobic001G506000--Sobic001G487100 Sobic004G075200 Sobic004G075200 Sobic001G506000--Sobic004G075200 Sobic001G115500 Sobic001G115500 Sobic001G506000--Sobic001G115500 Sobic005G175000 Sobic005G175000 Sobic001G506000--Sobic005G175000 Sobic009G207200 Sobic009G207200 Sobic001G506000--Sobic009G207200 Sobic003G122000 Sobic003G122000 Sobic001G506000--Sobic003G122000 Sobic001G469200 Sobic001G469200 Sobic001G506000--Sobic001G469200 Sobic007G165300 Sobic007G165300 Sobic001G506000--Sobic007G165300 Sobic002G280900 Sobic002G280900 Sobic001G506000--Sobic002G280900 Sobic001G532100--Sobic008G137600 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic009G201800--Sobic002G044000 Sobic004G010700 Sobic004G010700 Sobic009G201800--Sobic004G010700 Sobic004G249300 Sobic004G249300 Sobic009G201800--Sobic004G249300 Sobic001G382200 Sobic001G382200 Sobic009G201800--Sobic001G382200 Sobic009G258500 Sobic009G258500 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic009G201800--Sobic001G285300 Sobic009G234400 Sobic009G234400 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic003G410400 Sobic003G410400 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic003G126800 Sobic003G126800 Sobic008G058700--Sobic003G126800 Sobic003G252900 Sobic003G252900 Sobic008G058700--Sobic003G252900 Sobic008G058700--Sobic009G070200 Sobic008G058700--Sobic003G043400 Sobic008G058700--Sobic002G044000 Sobic008G058700--Sobic003G358300 Sobic009G160200 Sobic009G160200 Sobic008G058700--Sobic009G160200 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic006G094600--Sobic001G294900 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic006G094600--Sobic001G285300 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300
Octagon: transcription factors


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