Gene annotation
Transcriptome id Sobic.002G184900.1
Synonym Sb02g023290
Functional annotation SCO1 protein homolog, mitochondrial precursor, putative, expressed
UniProt C5XBB6
Pfam PF02630
Panther DB PTHR12151 PTHR12151:SF1
NCBI CDD KOG2792; Putative cytochrome C oxidase assembly protein
KEGG Orthology K07152; protein SCO1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G39740 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os09g20430.1 : SCO1 protein homolog, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a013822
Brachypodium KQJ90032 , KQJ90031 , PNT64468
Barley -
Wheat TraesCS5B02G192800 , TraesCS5D02G200500 , TraesCS5A02G190400
Populus -


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cDNA sequences
Sobic.002G184900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G402600 expressed protein -
2 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
3 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
4 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
5 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
6 Sobic.004G010700 expressed protein -
7 Sobic.006G143500 expressed protein -
8 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
9 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
10 Sobic.001G285300 expressed protein -
11 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
12 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
13 Sobic.003G152700 craniofacial development protein 1, putative, expressed -
14 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
15 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
16 Sobic.003G130600 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
17 Sobic.004G242100 expressed protein -
18 Sobic.010G265900 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
19 Sobic.001G149600 CS domain containing protein, putative, expressed -
20 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e


Gene co-expression network
sample Sobic002G184900 Sobic002G184900 Sobic001G402600 Sobic001G402600 Sobic002G184900--Sobic001G402600 Sobic002G386300 Sobic002G386300 Sobic002G184900--Sobic002G386300 Sobic009G201800 Sobic009G201800 Sobic002G184900--Sobic009G201800 Sobic004G343600 Sobic004G343600 Sobic002G184900--Sobic004G343600 Sobic003G358300 Sobic003G358300 Sobic002G184900--Sobic003G358300 Sobic004G010700 Sobic004G010700 Sobic002G184900--Sobic004G010700 Sobic006G143500 Sobic006G143500 Sobic002G184900--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic002G184900--Sobic002G044000 Sobic003G031200 Sobic003G031200 Sobic002G184900--Sobic003G031200 Sobic004G242100 Sobic004G242100 Sobic001G402600--Sobic004G242100 Sobic007G192100 Sobic007G192100 Sobic001G402600--Sobic007G192100 Sobic001G126200 Sobic001G126200 Sobic001G402600--Sobic001G126200 Sobic007G092100 Sobic007G092100 Sobic001G402600--Sobic007G092100 Sobic001G402600--Sobic003G358300 Sobic001G402600--Sobic006G143500 Sobic001G285300 Sobic001G285300 Sobic001G402600--Sobic001G285300 Sobic003G224300 Sobic003G224300 Sobic001G402600--Sobic003G224300 Sobic007G073600 Sobic007G073600 Sobic001G402600--Sobic007G073600 Sobic001G517600 Sobic001G517600 Sobic002G386300--Sobic001G517600 Sobic002G386300--Sobic003G358300 Sobic006G231700 Sobic006G231700 Sobic002G386300--Sobic006G231700 Sobic010G100000 Sobic010G100000 Sobic002G386300--Sobic010G100000 Sobic002G386300--Sobic002G044000 Sobic009G191200 Sobic009G191200 Sobic002G386300--Sobic009G191200 Sobic003G280700 Sobic003G280700 Sobic002G386300--Sobic003G280700 Sobic006G226500 Sobic006G226500 Sobic002G386300--Sobic006G226500 Sobic002G386300--Sobic004G343600 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic004G249300 Sobic004G249300 Sobic009G201800--Sobic004G249300 Sobic001G382200 Sobic001G382200 Sobic009G201800--Sobic001G382200 Sobic009G258500 Sobic009G258500 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic009G201800--Sobic001G285300 Sobic009G234400 Sobic009G234400 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic001G107300 Sobic001G107300 Sobic004G343600--Sobic001G107300 Sobic004G343600--Sobic002G386300 Sobic006G013900 Sobic006G013900 Sobic004G343600--Sobic006G013900 Sobic010G032700 Sobic010G032700 Sobic004G343600--Sobic010G032700 Sobic004G036800 Sobic004G036800 Sobic004G343600--Sobic004G036800 Sobic001G436300 Sobic001G436300 Sobic004G343600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic004G343600--Sobic006G127500 Sobic001G412500 Sobic001G412500 Sobic004G343600--Sobic001G412500 Sobic004G343600--Sobic002G184900 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic003G358300--Sobic009G191200 Sobic004G010700--Sobic009G201800 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic004G010700--Sobic001G382200 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic006G143500--Sobic004G032000 Sobic006G143500--Sobic001G285300 Sobic006G143500--Sobic002G044000 Sobic006G143500--Sobic001G517600 Sobic001G402300 Sobic001G402300 Sobic006G143500--Sobic001G402300 Sobic001G532100 Sobic001G532100 Sobic006G143500--Sobic001G532100 Sobic006G143500--Sobic003G358300 Sobic006G143500--Sobic001G126200 Sobic006G143500--Sobic001G402600 Sobic002G044000--Sobic009G201800 Sobic002G044000--Sobic003G358300 Sobic009G070200 Sobic009G070200 Sobic002G044000--Sobic009G070200 Sobic002G044000--Sobic001G285300 Sobic002G044000--Sobic006G143500 Sobic002G044000--Sobic004G032000 Sobic002G044000--Sobic001G126200 Sobic007G152400 Sobic007G152400 Sobic002G044000--Sobic007G152400 Sobic002G044000--Sobic002G386300 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic003G031200--Sobic001G402600 Sobic003G031200--Sobic001G285300
Octagon: transcription factors


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