Gene annotation
Transcriptome id Sobic.001G149600.3,Sobic.001G149600.2,Sobic.001G149600.4
Synonym Sb01g013010
Functional annotation CS domain containing protein, putative, expressed
UniProt A0A1B6QJ09
Pfam PF04969
Panther DB PTHR22932 PTHR22932:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03773 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os03g45270.1 : CS domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007567
Brachypodium KQK13916 , KQK13915 , KQK13914
Barley HORVU4Hr1G002230.3 , HORVU4Hr1G002230.2 , HORVU4Hr1G002230.1
Wheat TraesCS4B02G014200 , TraesCS4A02G299200 , TraesCS4D02G012400
Populus -


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cDNA sequences
Sobic.001G149600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
2 Sobic.006G149200 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
3 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
4 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
5 Sobic.002G257400 peptidase, T1 family, putative, expressed -
6 Sobic.004G297300 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05609: UCHL3, ubiquitin carboxyl-terminal hydrolase L3
7 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
8 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
9 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
10 Sobic.002G184900 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
11 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
12 Sobic.010G180700 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
13 Sobic.009G191600 tesmin/TSO1-like CXC domain containing protein, expressed -
14 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
15 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
16 Sobic.010G267900 expressed protein -
17 Sobic.006G120700 N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, putative, expressed K03434: N-acetylglucosaminylphosphatidylinositol deacetylase
18 Sobic.005G080900 expressed protein -
19 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
20 Sobic.006G200000 RNA recognition motif, putative, expressed -


Gene co-expression network
sample Sobic001G149600 Sobic001G149600 Sobic006G231700 Sobic006G231700 Sobic001G149600--Sobic006G231700 Sobic006G149200 Sobic006G149200 Sobic001G149600--Sobic006G149200 Sobic007G163700 Sobic007G163700 Sobic001G149600--Sobic007G163700 Sobic003G358300 Sobic003G358300 Sobic001G149600--Sobic003G358300 Sobic002G257400 Sobic002G257400 Sobic001G149600--Sobic002G257400 Sobic004G297300 Sobic004G297300 Sobic001G149600--Sobic004G297300 Sobic001G412500 Sobic001G412500 Sobic001G149600--Sobic001G412500 Sobic006G013900 Sobic006G013900 Sobic001G149600--Sobic006G013900 Sobic001G066700 Sobic001G066700 Sobic001G149600--Sobic001G066700 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic006G115000 Sobic006G115000 Sobic006G149200--Sobic006G115000 Sobic002G286900 Sobic002G286900 Sobic006G149200--Sobic002G286900 Sobic003G018600 Sobic003G018600 Sobic006G149200--Sobic003G018600 Sobic003G073900 Sobic003G073900 Sobic006G149200--Sobic003G073900 Sobic004G217450 Sobic004G217450 Sobic006G149200--Sobic004G217450 Sobic003G150000 Sobic003G150000 Sobic006G149200--Sobic003G150000 Sobic006G149200--Sobic006G231700 Sobic005G110800 Sobic005G110800 Sobic006G149200--Sobic005G110800 Sobic006G159600 Sobic006G159600 Sobic006G149200--Sobic006G159600 Sobic007G163700--Sobic006G231700 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic001G529000 Sobic001G529000 Sobic007G163700--Sobic001G529000 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic002G373800 Sobic002G373800 Sobic007G163700--Sobic002G373800 Sobic007G163700--Sobic003G018600 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic007G076300 Sobic007G076300 Sobic002G257400--Sobic007G076300 Sobic004G224900 Sobic004G224900 Sobic002G257400--Sobic004G224900 Sobic004G335000 Sobic004G335000 Sobic002G257400--Sobic004G335000 Sobic002G428200 Sobic002G428200 Sobic002G257400--Sobic002G428200 Sobic007G152400 Sobic007G152400 Sobic002G257400--Sobic007G152400 Sobic004G204800 Sobic004G204800 Sobic002G257400--Sobic004G204800 Sobic007G186800 Sobic007G186800 Sobic002G257400--Sobic007G186800 Sobic004G138800 Sobic004G138800 Sobic002G257400--Sobic004G138800 Sobic001G058100 Sobic001G058100 Sobic002G257400--Sobic001G058100 Sobic004G297300--Sobic003G358300 Sobic004G297300--Sobic003G362400 Sobic009G117900 Sobic009G117900 Sobic004G297300--Sobic009G117900 Sobic004G297300--Sobic004G166500 Sobic004G297300--Sobic004G138800 Sobic003G072300 Sobic003G072300 Sobic004G297300--Sobic003G072300 Sobic001G483100 Sobic001G483100 Sobic004G297300--Sobic001G483100 Sobic006G222400 Sobic006G222400 Sobic004G297300--Sobic006G222400 Sobic004G297300--Sobic001G066700 Sobic009G165500 Sobic009G165500 Sobic001G412500--Sobic009G165500 Sobic003G084300 Sobic003G084300 Sobic001G412500--Sobic003G084300 Sobic004G343600 Sobic004G343600 Sobic001G412500--Sobic004G343600 Sobic001G412500--Sobic006G013900 Sobic004G208100 Sobic004G208100 Sobic001G412500--Sobic004G208100 Sobic001G107300 Sobic001G107300 Sobic001G412500--Sobic001G107300 Sobic001G150033 Sobic001G150033 Sobic001G412500--Sobic001G150033 Sobic001G261549 Sobic001G261549 Sobic001G412500--Sobic001G261549 Sobic001G528600 Sobic001G528600 Sobic001G412500--Sobic001G528600 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic006G013900--Sobic002G386300 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic009G070200 Sobic009G070200 Sobic001G066700--Sobic009G070200
Octagon: transcription factors


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