Gene annotation
Transcriptome id Sobic.010G180700.2,Sobic.010G180700.1
Synonym Sb10g023220, AtDBP1, DBP1
Functional annotation protein phosphatase 2C, putative, expressed
UniProt C5Z5J5 , A0A1W0VTS6
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF346
NCBI CDD KOG0699; Serine/threonine protein phosphatase KOG0698Serine/threonine protein phosphatase
KEGG Orthology K14803; protein phosphatase PTC2/3
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT2G25620 : DNA-binding protein phosphatase 1
RAP-DB (Rice) LOC_Os06g39600.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a051237
Brachypodium KQK17818 , KQK17819
Barley HORVU7Hr1G085010.1 , HORVU7Hr1G085010.2 , HORVU7Hr1G085010.5 , HORVU7Hr1G085010.4 , HORVU7Hr1G085010.7 , HORVU7Hr1G085010.6
Wheat TraesCS7D02G351600 , TraesCS7D02G351600 , TraesCS7B02G256300 , TraesCS7B02G256300 , TraesCS7A02G371100 , TraesCS7A02G371100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
2 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
3 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
4 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
5 Sobic.006G139700 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
6 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
7 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
8 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
9 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
10 Sobic.003G368500 Yip1 domain containing protein, expressed -
11 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
12 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
13 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
14 Sobic.006G010600 peptidyl-prolyl cis-trans isomerase, putative, expressed K09578: peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
15 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
16 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
17 Sobic.005G157200 prefoldin subunit, putative, expressed K09549: prefoldin subunit 2
18 Sobic.010G225300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
19 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
20 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -


Gene co-expression network
sample Sobic010G180700 Sobic010G180700 Sobic005G111100 Sobic005G111100 Sobic010G180700--Sobic005G111100 Sobic007G152400 Sobic007G152400 Sobic010G180700--Sobic007G152400 Sobic003G362400 Sobic003G362400 Sobic010G180700--Sobic003G362400 Sobic001G128400 Sobic001G128400 Sobic010G180700--Sobic001G128400 Sobic006G139700 Sobic006G139700 Sobic010G180700--Sobic006G139700 Sobic001G066700 Sobic001G066700 Sobic010G180700--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic010G180700--Sobic006G231700 Sobic007G091000 Sobic007G091000 Sobic010G180700--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic010G180700--Sobic002G428200 Sobic005G111100--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic007G152400--Sobic005G111100 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic002G078400 Sobic002G078400 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic003G362400--Sobic007G091000 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic001G128400--Sobic005G111100 Sobic001G128400--Sobic003G129800 Sobic010G204500 Sobic010G204500 Sobic001G128400--Sobic010G204500 Sobic006G081100 Sobic006G081100 Sobic001G128400--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic001G128400--Sobic003G249700 Sobic002G049300 Sobic002G049300 Sobic001G128400--Sobic002G049300 Sobic001G128400--Sobic010G054200 Sobic001G128400--Sobic003G280700 Sobic003G109600 Sobic003G109600 Sobic001G128400--Sobic003G109600 Sobic006G010600 Sobic006G010600 Sobic006G139700--Sobic006G010600 Sobic006G139700--Sobic005G111100 Sobic001G018500 Sobic001G018500 Sobic006G139700--Sobic001G018500 Sobic006G139700--Sobic010G180700 Sobic003G150000 Sobic003G150000 Sobic006G139700--Sobic003G150000 Sobic007G186800 Sobic007G186800 Sobic006G139700--Sobic007G186800 Sobic003G368500 Sobic003G368500 Sobic006G139700--Sobic003G368500 Sobic002G222900 Sobic002G222900 Sobic006G139700--Sobic002G222900 Sobic007G134000 Sobic007G134000 Sobic006G139700--Sobic007G134000 Sobic003G358300 Sobic003G358300 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic009G070200 Sobic009G070200 Sobic001G066700--Sobic009G070200 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic006G231700--Sobic001G128400 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic007G091000--Sobic002G078400 Sobic007G091000--Sobic003G362400 Sobic007G091000--Sobic001G128400 Sobic007G091000--Sobic005G111100 Sobic007G091000--Sobic007G152400 Sobic003G305100 Sobic003G305100 Sobic007G091000--Sobic003G305100 Sobic007G091000--Sobic003G368500 Sobic001G025600 Sobic001G025600 Sobic007G091000--Sobic001G025600 Sobic003G277000 Sobic003G277000 Sobic007G091000--Sobic003G277000 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic007G176200 Sobic007G176200 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic006G252200 Sobic006G252200 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.