Gene annotation
Transcriptome id Sobic.004G297300.1
Synonym UCH3, Sb04g033120
Functional annotation ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt C5XS03
Pfam PF01088
Panther DB PTHR10589
NCBI CDD KOG1415; Ubiquitin C-terminal hydrolase UCHL1
KEGG Orthology K05609; UCHL3, ubiquitin carboxyl-terminal hydrolase L3
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0005622intracellular GO:0004843thiol-dependent ubiquitin-specific protease activity


Orthologs (automatic annotation)
TAIR AT4G17510 : ubiquitin C-terminal hydrolase 3
RAP-DB (Rice) LOC_Os02g43760.1 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a032186 , Zm00025a020897
Brachypodium PNT69167
Barley HORVU6Hr1G062360.5 , HORVU6Hr1G062360.6 , HORVU6Hr1G062360.1 , HORVU6Hr1G062360.3 , HORVU6Hr1G062360.2
Wheat TraesCS2A02G393000 , TraesCS6A02G243000 , TraesCS6A02G243000 , TraesCS6A02G243000 , TraesCS6B02G281200 , TraesCS6B02G281200 , TraesCS6D02G225300 , TraesCS6D02G225300 , TraesCS6D02G225300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
2 Sobic.003G362400 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
3 Sobic.009G117900 OsFBX167 - F-box domain containing protein, expressed -
4 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
5 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
6 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
7 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
8 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
9 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
10 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
11 Sobic.009G117200 expressed protein -
12 Sobic.008G130400 prefoldin, putative, expressed -
13 Sobic.009G212400 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
14 Sobic.001G418900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
16 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
17 Sobic.002G159900 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
18 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
19 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
20 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20


Gene co-expression network
sample Sobic004G297300 Sobic004G297300 Sobic003G358300 Sobic003G358300 Sobic004G297300--Sobic003G358300 Sobic003G362400 Sobic003G362400 Sobic004G297300--Sobic003G362400 Sobic009G117900 Sobic009G117900 Sobic004G297300--Sobic009G117900 Sobic004G166500 Sobic004G166500 Sobic004G297300--Sobic004G166500 Sobic004G138800 Sobic004G138800 Sobic004G297300--Sobic004G138800 Sobic003G072300 Sobic003G072300 Sobic004G297300--Sobic003G072300 Sobic001G483100 Sobic001G483100 Sobic004G297300--Sobic001G483100 Sobic006G222400 Sobic006G222400 Sobic004G297300--Sobic006G222400 Sobic001G066700 Sobic001G066700 Sobic004G297300--Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic002G078400 Sobic002G078400 Sobic003G362400--Sobic002G078400 Sobic004G107600 Sobic004G107600 Sobic003G362400--Sobic004G107600 Sobic001G529000 Sobic001G529000 Sobic003G362400--Sobic001G529000 Sobic007G091000 Sobic007G091000 Sobic003G362400--Sobic007G091000 Sobic003G362400--Sobic005G111100 Sobic002G116200 Sobic002G116200 Sobic003G362400--Sobic002G116200 Sobic001G331900 Sobic001G331900 Sobic003G362400--Sobic001G331900 Sobic010G213400 Sobic010G213400 Sobic003G362400--Sobic010G213400 Sobic009G232000 Sobic009G232000 Sobic003G362400--Sobic009G232000 Sobic004G248800 Sobic004G248800 Sobic009G117900--Sobic004G248800 Sobic009G117900--Sobic004G297300 Sobic009G117900--Sobic003G362400 Sobic010G257100 Sobic010G257100 Sobic009G117900--Sobic010G257100 Sobic002G194100 Sobic002G194100 Sobic009G117900--Sobic002G194100 Sobic004G196300 Sobic004G196300 Sobic009G117900--Sobic004G196300 Sobic009G117900--Sobic007G163700 Sobic009G117900--Sobic001G529000 Sobic009G191600 Sobic009G191600 Sobic009G117900--Sobic009G191600 Sobic004G166500--Sobic003G358300 Sobic001G201100 Sobic001G201100 Sobic004G166500--Sobic001G201100 Sobic004G166500--Sobic001G066700 Sobic003G368700 Sobic003G368700 Sobic004G166500--Sobic003G368700 Sobic008G130400 Sobic008G130400 Sobic004G166500--Sobic008G130400 Sobic002G218000 Sobic002G218000 Sobic004G166500--Sobic002G218000 Sobic006G239300 Sobic006G239300 Sobic004G166500--Sobic006G239300 Sobic001G505500 Sobic001G505500 Sobic004G166500--Sobic001G505500 Sobic009G070200 Sobic009G070200 Sobic004G166500--Sobic009G070200 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G224900 Sobic004G224900 Sobic004G138800--Sobic004G224900 Sobic007G076300 Sobic007G076300 Sobic004G138800--Sobic007G076300 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic001G096100 Sobic001G096100 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic006G252200 Sobic006G252200 Sobic004G138800--Sobic006G252200 Sobic002G081600 Sobic002G081600 Sobic003G072300--Sobic002G081600 Sobic004G205100 Sobic004G205100 Sobic003G072300--Sobic004G205100 Sobic002G187500 Sobic002G187500 Sobic003G072300--Sobic002G187500 Sobic003G209000 Sobic003G209000 Sobic003G072300--Sobic003G209000 Sobic002G190900 Sobic002G190900 Sobic003G072300--Sobic002G190900 Sobic006G213000 Sobic006G213000 Sobic003G072300--Sobic006G213000 Sobic010G204500 Sobic010G204500 Sobic003G072300--Sobic010G204500 Sobic003G155400 Sobic003G155400 Sobic003G072300--Sobic003G155400 Sobic002G379500 Sobic002G379500 Sobic003G072300--Sobic002G379500 Sobic001G483100--Sobic010G204500 Sobic009G180000 Sobic009G180000 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic002G056200 Sobic002G056200 Sobic001G483100--Sobic002G056200 Sobic003G249700 Sobic003G249700 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic003G109600 Sobic003G109600 Sobic001G483100--Sobic003G109600 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic006G222400--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic006G222400--Sobic008G132800 Sobic008G137600 Sobic008G137600 Sobic006G222400--Sobic008G137600 Sobic002G428200 Sobic002G428200 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic010G017000 Sobic010G017000 Sobic006G222400--Sobic010G017000 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic001G066700--Sobic009G070200
Octagon: transcription factors


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