Gene annotation
Transcriptome id Sobic.006G131900.1,Sobic.006G131900.2
Synonym Sb06g021190
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ethylene-responsive protein related, putative, expressed
UniProt A0A1B6PLT7 , A0A1B6PLR5
Pfam -
Panther DB PTHR16223 PTHR16223:SF44
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05710 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g41570.1,LOC_Os04g41570.3 : ethylene-responsive protein related, putative, expressed
MaizeGDB (Corn) Zm00025a056370 , Zm00025a010856
Brachypodium -
Barley HORVU2Hr1G084910.1 , HORVU2Hr1G084890.1
Wheat TraesCS2A02G348800 , TraesCS2D02G347200 , TraesCS2A02G365800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G131900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G210000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ACT domain containing protein, expressed K01653: E2.2.1.6S, ilvH, acetolactate synthase I/III small subunit
2 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.007G140500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
4 Sobic.005G044100 harpin-induced protein 1 domain containing protein, expressed -
5 Sobic.003G119900 inositol-1-monophosphatase, putative, expressed K18649: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase
6 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
7 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
8 Sobic.005G084900 OsDegp12 - Putative Deg protease homologue, expressed -
9 Sobic.010G093400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Starch synthesis(PubMedID : 31624872)@Starch Synthase IIa(PubMedID : 21853065)@soluble starch synthase 2-3, chloroplast precursor, putative, expressed K00703: starch synthase
10 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
11 Sobic.006G164000 expressed protein -
12 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
13 Sobic.001G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan phosphorylast isozyme, putative, expressed K00688: PYG, glycogen phosphorylase
14 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
15 Sobic.003G304500 expressed protein -
16 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
17 Sobic.003G430100 Phosphoesterase family protein(PubMedID : 24906815)@phosphoesterase family protein, putative, expressed K01114: phospholipase C
18 Sobic.010G207400 protein kinase domain containing protein, expressed -
19 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.005G074400 OsPDIL1-1 protein disulfide isomerase PDIL1-1, expressed K09580: PDIA1, protein disulfide-isomerase A1


Gene co-expression network
sample Sobic006G131900 Sobic006G131900 Sobic004G210000 Sobic004G210000 Sobic006G131900--Sobic004G210000 Sobic004G155300 Sobic004G155300 Sobic006G131900--Sobic004G155300 Sobic007G140500 Sobic007G140500 Sobic006G131900--Sobic007G140500 Sobic005G044100 Sobic005G044100 Sobic006G131900--Sobic005G044100 Sobic003G119900 Sobic003G119900 Sobic006G131900--Sobic003G119900 Sobic003G358200 Sobic003G358200 Sobic006G131900--Sobic003G358200 Sobic010G273800 Sobic010G273800 Sobic006G131900--Sobic010G273800 Sobic005G084900 Sobic005G084900 Sobic006G131900--Sobic005G084900 Sobic010G093400 Sobic010G093400 Sobic006G131900--Sobic010G093400 Sobic004G196800 Sobic004G196800 Sobic004G210000--Sobic004G196800 Sobic003G430100 Sobic003G430100 Sobic004G210000--Sobic003G430100 Sobic008G116100 Sobic008G116100 Sobic004G210000--Sobic008G116100 Sobic010G020100 Sobic010G020100 Sobic004G210000--Sobic010G020100 Sobic007G041200 Sobic007G041200 Sobic004G210000--Sobic007G041200 Sobic010G084800 Sobic010G084800 Sobic004G210000--Sobic010G084800 Sobic007G150700 Sobic007G150700 Sobic004G210000--Sobic007G150700 Sobic010G047300 Sobic010G047300 Sobic004G210000--Sobic010G047300 Sobic008G109600 Sobic008G109600 Sobic004G210000--Sobic008G109600 Sobic003G304500 Sobic003G304500 Sobic004G155300--Sobic003G304500 Sobic009G025100 Sobic009G025100 Sobic004G155300--Sobic009G025100 Sobic004G028800 Sobic004G028800 Sobic004G155300--Sobic004G028800 Sobic004G318400 Sobic004G318400 Sobic004G155300--Sobic004G318400 Sobic004G274500 Sobic004G274500 Sobic004G155300--Sobic004G274500 Sobic006G244500 Sobic006G244500 Sobic004G155300--Sobic006G244500 Sobic001G170500 Sobic001G170500 Sobic004G155300--Sobic001G170500 Sobic004G155300--Sobic004G196800 Sobic007G018000 Sobic007G018000 Sobic004G155300--Sobic007G018000 Sobic005G098700 Sobic005G098700 Sobic007G140500--Sobic005G098700 Sobic007G140500--Sobic004G318400 Sobic005G074400 Sobic005G074400 Sobic007G140500--Sobic005G074400 Sobic004G102900 Sobic004G102900 Sobic007G140500--Sobic004G102900 Sobic005G064200 Sobic005G064200 Sobic007G140500--Sobic005G064200 Sobic001G067000 Sobic001G067000 Sobic007G140500--Sobic001G067000 Sobic001G249200 Sobic001G249200 Sobic007G140500--Sobic001G249200 Sobic009G217300 Sobic009G217300 Sobic007G140500--Sobic009G217300 Sobic002G093900 Sobic002G093900 Sobic007G140500--Sobic002G093900 Sobic009G187600 Sobic009G187600 Sobic005G044100--Sobic009G187600 Sobic003G410200 Sobic003G410200 Sobic005G044100--Sobic003G410200 Sobic001G478700 Sobic001G478700 Sobic005G044100--Sobic001G478700 Sobic001G434400 Sobic001G434400 Sobic005G044100--Sobic001G434400 Sobic002G280900 Sobic002G280900 Sobic005G044100--Sobic002G280900 Sobic006G094500 Sobic006G094500 Sobic005G044100--Sobic006G094500 Sobic005G044100--Sobic006G131900 Sobic007G224300 Sobic007G224300 Sobic005G044100--Sobic007G224300 Sobic005G044100--Sobic005G084900 Sobic004G014100 Sobic004G014100 Sobic003G119900--Sobic004G014100 Sobic008G174500 Sobic008G174500 Sobic003G119900--Sobic008G174500 Sobic003G129300 Sobic003G129300 Sobic003G119900--Sobic003G129300 Sobic007G167800 Sobic007G167800 Sobic003G119900--Sobic007G167800 Sobic010G152000 Sobic010G152000 Sobic003G119900--Sobic010G152000 Sobic006G127200 Sobic006G127200 Sobic003G119900--Sobic006G127200 Sobic008G160600 Sobic008G160600 Sobic003G119900--Sobic008G160600 Sobic003G217500 Sobic003G217500 Sobic003G119900--Sobic003G217500 Sobic010G223500 Sobic010G223500 Sobic003G119900--Sobic010G223500 Sobic003G358200--Sobic010G093400 Sobic002G420800 Sobic002G420800 Sobic003G358200--Sobic002G420800 Sobic007G152500 Sobic007G152500 Sobic003G358200--Sobic007G152500 Sobic006G164000 Sobic006G164000 Sobic003G358200--Sobic006G164000 Sobic003G358200--Sobic001G067000 Sobic001G379000 Sobic001G379000 Sobic003G358200--Sobic001G379000 Sobic001G294600 Sobic001G294600 Sobic003G358200--Sobic001G294600 Sobic001G419700 Sobic001G419700 Sobic003G358200--Sobic001G419700 Sobic010G207400 Sobic010G207400 Sobic003G358200--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic010G273800--Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic010G273800--Sobic003G092600 Sobic004G262100 Sobic004G262100 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100 Sobic009G002000 Sobic009G002000 Sobic005G084900--Sobic009G002000 Sobic009G030400 Sobic009G030400 Sobic005G084900--Sobic009G030400 Sobic005G084900--Sobic006G164000 Sobic005G084900--Sobic002G280900 Sobic005G084900--Sobic001G067000 Sobic005G084900--Sobic001G294600 Sobic010G059700 Sobic010G059700 Sobic005G084900--Sobic010G059700 Sobic004G145600 Sobic004G145600 Sobic005G084900--Sobic004G145600 Sobic010G141600 Sobic010G141600 Sobic005G084900--Sobic010G141600 Sobic010G093400--Sobic007G152500 Sobic007G204600 Sobic007G204600 Sobic010G093400--Sobic007G204600 Sobic010G093400--Sobic010G273800 Sobic010G093400--Sobic003G358200 Sobic003G230500 Sobic003G230500 Sobic010G093400--Sobic003G230500 Sobic010G093400--Sobic002G420800 Sobic002G100000 Sobic002G100000 Sobic010G093400--Sobic002G100000 Sobic004G212350 Sobic004G212350 Sobic010G093400--Sobic004G212350 Sobic005G171800 Sobic005G171800 Sobic010G093400--Sobic005G171800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.