Gene annotation
Transcriptome id Sobic.009G224600.1
Synonym SYP71, Sb09g027810, ATSYP71
Functional annotation SNARE domain containing protein, putative, expressed
UniProt C5YV35
Pfam PF05739
Panther DB PTHR19957 PTHR19957:SF129
NCBI CDD KOG3202; SNARE protein TLG1/Syntaxin 6
KEGG Orthology K08506; syntaxin of plants SYP7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G09740 : syntaxin of plants 71
RAP-DB (Rice) LOC_Os05g48020.1 : SNARE domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044485
Brachypodium KQK05001 , KQK23613
Barley HORVU1Hr1G084160.1 , HORVU1Hr1G084160.2
Wheat TraesCS1A02G379800 , TraesCS1D02G387200 , TraesCS1B02G401800 , TraesCS1D02G190400
Populus -


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cDNA sequences
Sobic.009G224600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G144900 fiber protein Fb34, putative, expressed -
2 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
3 Sobic.010G217100 ubiquitin-conjugating enzyme, putative, expressed K10583: UBE2S, ubiquitin-conjugating enzyme E2 S
4 Sobic.009G189200 secretory carrier-associated membrane protein, putative, expressed -
5 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
6 Sobic.009G124200 down-regulated TF in developmental senescence(PubMedID : 27586543)@SMOS1(Ortholog in rice:Hirano et al. (2017))(PubMedID : 31659924)@AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
7 Sobic.006G094100 expressed protein -
8 Sobic.009G165500 Lung seven transmembrane receptor domain containing protein, putative, expressed -
9 Sobic.001G418000 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
10 Sobic.001G030400 protein kinase family protein, putative, expressed -
11 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
12 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
13 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
14 Sobic.002G043300 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
15 Sobic.006G104100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
16 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
17 Sobic.004G208100 expressed protein -
18 Sobic.009G169200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
19 Sobic.004G309800 remorin C-terminal domain containing protein, putative, expressed -
20 Sobic.004G331200 expressed protein -


Gene co-expression network
sample Sobic009G224600 Sobic009G224600 Sobic010G144900 Sobic010G144900 Sobic009G224600--Sobic010G144900 Sobic003G084300 Sobic003G084300 Sobic009G224600--Sobic003G084300 Sobic010G217100 Sobic010G217100 Sobic009G224600--Sobic010G217100 Sobic009G189200 Sobic009G189200 Sobic009G224600--Sobic009G189200 Sobic001G412500 Sobic001G412500 Sobic009G224600--Sobic001G412500 Sobic009G124200 Sobic009G124200 Sobic009G224600--Sobic009G124200 Sobic006G094100 Sobic006G094100 Sobic009G224600--Sobic006G094100 Sobic009G165500 Sobic009G165500 Sobic009G224600--Sobic009G165500 Sobic001G418000 Sobic001G418000 Sobic009G224600--Sobic001G418000 Sobic010G144900--Sobic009G189200 Sobic006G104100 Sobic006G104100 Sobic010G144900--Sobic006G104100 Sobic001G397000 Sobic001G397000 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic002G236700 Sobic002G236700 Sobic010G144900--Sobic002G236700 Sobic001G371100 Sobic001G371100 Sobic010G144900--Sobic001G371100 Sobic001G157800 Sobic001G157800 Sobic003G084300--Sobic001G157800 Sobic003G084300--Sobic009G165500 Sobic003G084300--Sobic009G189200 Sobic003G011100 Sobic003G011100 Sobic003G084300--Sobic003G011100 Sobic002G385400 Sobic002G385400 Sobic003G084300--Sobic002G385400 Sobic010G265900 Sobic010G265900 Sobic003G084300--Sobic010G265900 Sobic002G258300 Sobic002G258300 Sobic003G084300--Sobic002G258300 Sobic006G200000 Sobic006G200000 Sobic003G084300--Sobic006G200000 Sobic006G102900 Sobic006G102900 Sobic003G084300--Sobic006G102900 Sobic010G217100--Sobic006G104100 Sobic010G217100--Sobic010G144900 Sobic010G217100--Sobic009G124200 Sobic010G138500 Sobic010G138500 Sobic010G217100--Sobic010G138500 Sobic003G003700 Sobic003G003700 Sobic010G217100--Sobic003G003700 Sobic010G217100--Sobic009G224600 Sobic001G468500 Sobic001G468500 Sobic010G217100--Sobic001G468500 Sobic001G226100 Sobic001G226100 Sobic010G217100--Sobic001G226100 Sobic006G191700 Sobic006G191700 Sobic010G217100--Sobic006G191700 Sobic009G189200--Sobic006G102900 Sobic001G261549 Sobic001G261549 Sobic009G189200--Sobic001G261549 Sobic002G057500 Sobic002G057500 Sobic009G189200--Sobic002G057500 Sobic009G189200--Sobic010G144900 Sobic009G189200--Sobic007G044400 Sobic004G285900 Sobic004G285900 Sobic009G189200--Sobic004G285900 Sobic009G189200--Sobic003G084300 Sobic003G122200 Sobic003G122200 Sobic009G189200--Sobic003G122200 Sobic001G131600 Sobic001G131600 Sobic009G189200--Sobic001G131600 Sobic001G412500--Sobic009G165500 Sobic001G412500--Sobic003G084300 Sobic004G343600 Sobic004G343600 Sobic001G412500--Sobic004G343600 Sobic006G013900 Sobic006G013900 Sobic001G412500--Sobic006G013900 Sobic004G208100 Sobic004G208100 Sobic001G412500--Sobic004G208100 Sobic001G107300 Sobic001G107300 Sobic001G412500--Sobic001G107300 Sobic001G150033 Sobic001G150033 Sobic001G412500--Sobic001G150033 Sobic001G412500--Sobic001G261549 Sobic001G528600 Sobic001G528600 Sobic001G412500--Sobic001G528600 Sobic004G331200 Sobic004G331200 Sobic009G124200--Sobic004G331200 Sobic009G124200--Sobic010G217100 Sobic001G030400 Sobic001G030400 Sobic009G124200--Sobic001G030400 Sobic009G124200--Sobic009G224600 Sobic009G124200--Sobic006G094100 Sobic007G009000 Sobic007G009000 Sobic009G124200--Sobic007G009000 Sobic009G124200--Sobic003G003700 Sobic009G124200--Sobic002G236700 Sobic009G124200--Sobic010G144900 Sobic001G290500 Sobic001G290500 Sobic006G094100--Sobic001G290500 Sobic006G275500 Sobic006G275500 Sobic006G094100--Sobic006G275500 Sobic001G140700 Sobic001G140700 Sobic006G094100--Sobic001G140700 Sobic009G109300 Sobic009G109300 Sobic006G094100--Sobic009G109300 Sobic004G330600 Sobic004G330600 Sobic006G094100--Sobic004G330600 Sobic009G188900 Sobic009G188900 Sobic006G094100--Sobic009G188900 Sobic002G230800 Sobic002G230800 Sobic006G094100--Sobic002G230800 Sobic010G250400 Sobic010G250400 Sobic006G094100--Sobic010G250400 Sobic006G196600 Sobic006G196600 Sobic006G094100--Sobic006G196600 Sobic009G165500--Sobic003G084300 Sobic001G505000 Sobic001G505000 Sobic009G165500--Sobic001G505000 Sobic006G149200 Sobic006G149200 Sobic009G165500--Sobic006G149200 Sobic010G238800 Sobic010G238800 Sobic009G165500--Sobic010G238800 Sobic010G054200 Sobic010G054200 Sobic009G165500--Sobic010G054200 Sobic001G429000 Sobic001G429000 Sobic009G165500--Sobic001G429000 Sobic008G135000 Sobic008G135000 Sobic009G165500--Sobic008G135000 Sobic009G165500--Sobic001G412500 Sobic006G201500 Sobic006G201500 Sobic009G165500--Sobic006G201500 Sobic001G196100 Sobic001G196100 Sobic001G418000--Sobic001G196100 Sobic003G096000 Sobic003G096000 Sobic001G418000--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic001G418000--Sobic010G089500 Sobic002G159900 Sobic002G159900 Sobic001G418000--Sobic002G159900 Sobic001G418000--Sobic007G044400 Sobic006G156000 Sobic006G156000 Sobic001G418000--Sobic006G156000 Sobic003G319000 Sobic003G319000 Sobic001G418000--Sobic003G319000 Sobic001G418000--Sobic003G084300 Sobic002G128800 Sobic002G128800 Sobic001G418000--Sobic002G128800
Octagon: transcription factors


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