Gene annotation
Transcriptome id Sobic.009G124200.1
Synonym Sb09g019190,
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
SMOS1(Ortholog in rice:Hirano et al. (2017)) (PubMedID : 31659924)
AP2 domain containing protein, expressed
UniProt C5YXG3
Pfam PF00847
Panther DB PTHR32467 PTHR32467:SF32
NCBI CDD -
KEGG Orthology K09285; OVM, AP2-like factor, ANT lineage
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0007275multicellular organism development


Orthologs (automatic annotation)
TAIR AT2G41710 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os05g32270.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043540
Brachypodium KQK06561
Barley HORVU1Hr1G056500.28 , HORVU1Hr1G056500.29 , HORVU1Hr1G056500.24 , HORVU1Hr1G056500.25 , HORVU1Hr1G056500.26 , HORVU1Hr1G056500.27 , HORVU1Hr1G056500.20 , HORVU1Hr1G056500.21 , HORVU1Hr1G056500.22 , HORVU1Hr1G056500.23 , HORVU1Hr1G056500.14 , HORVU1Hr1G056500.5 , HORVU1Hr1G056500.19 , HORVU1Hr1G056500.7 , HORVU1Hr1G056500.6 , HORVU1Hr1G056500.1 , HORVU1Hr1G056500.3 , HORVU1Hr1G056500.9 , HORVU1Hr1G056500.8 , HORVU1Hr1G056500.4 , HORVU1Hr1G056500.11 , HORVU1Hr1G056500.10 , HORVU1Hr1G056500.13 , HORVU1Hr1G056500.12 , HORVU1Hr1G056500.15 , HORVU1Hr1G056500.17 , HORVU1Hr1G056500.16 , HORVU1Hr1G056500.18 , HORVU1Hr1G056500.2 , HORVU1Hr1G056500.34 , HORVU1Hr1G056500.33 , HORVU1Hr1G056500.32 , HORVU1Hr1G056500.31 , HORVU1Hr1G056500.30
Wheat TraesCS1A02G242800 , TraesCS1B02G254300 , TraesCS1D02G242800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331200 expressed protein -
2 Sobic.010G217100 ubiquitin-conjugating enzyme, putative, expressed K10583: UBE2S, ubiquitin-conjugating enzyme E2 S
3 Sobic.001G030400 protein kinase family protein, putative, expressed -
4 Sobic.009G224600 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
5 Sobic.006G094100 expressed protein -
6 Sobic.007G009000 expressed protein -
7 Sobic.003G003700 ABIL2, putative, expressed -
8 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
9 Sobic.010G144900 fiber protein Fb34, putative, expressed -
10 Sobic.001G468500 ethylene-responsive element-binding protein, putative, expressed -
11 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
12 Sobic.010G163900 BES1/BZR1 homolog protein, putative, expressed -
13 Sobic.005G129700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
14 Sobic.003G300900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
15 Sobic.007G218100 transmembrane receptor, putative, expressed -
16 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
17 Sobic.006G200000 RNA recognition motif, putative, expressed -
18 Sobic.002G230800 expressed protein -
19 Sobic.003G072900 OsRhmbd18 - Putative Rhomboid homologue, expressed -
20 Sobic.004G268800 nodulin, putative, expressed -


Gene co-expression network
sample Sobic009G124200 Sobic009G124200 Sobic004G331200 Sobic004G331200 Sobic009G124200--Sobic004G331200 Sobic010G217100 Sobic010G217100 Sobic009G124200--Sobic010G217100 Sobic001G030400 Sobic001G030400 Sobic009G124200--Sobic001G030400 Sobic009G224600 Sobic009G224600 Sobic009G124200--Sobic009G224600 Sobic006G094100 Sobic006G094100 Sobic009G124200--Sobic006G094100 Sobic007G009000 Sobic007G009000 Sobic009G124200--Sobic007G009000 Sobic003G003700 Sobic003G003700 Sobic009G124200--Sobic003G003700 Sobic002G236700 Sobic002G236700 Sobic009G124200--Sobic002G236700 Sobic010G144900 Sobic010G144900 Sobic009G124200--Sobic010G144900 Sobic001G289900 Sobic001G289900 Sobic004G331200--Sobic001G289900 Sobic010G105400 Sobic010G105400 Sobic004G331200--Sobic010G105400 Sobic001G078600 Sobic001G078600 Sobic004G331200--Sobic001G078600 Sobic001G528600 Sobic001G528600 Sobic004G331200--Sobic001G528600 Sobic006G191700 Sobic006G191700 Sobic004G331200--Sobic006G191700 Sobic001G468500 Sobic001G468500 Sobic004G331200--Sobic001G468500 Sobic003G444300 Sobic003G444300 Sobic004G331200--Sobic003G444300 Sobic001G255600 Sobic001G255600 Sobic004G331200--Sobic001G255600 Sobic008G096200 Sobic008G096200 Sobic004G331200--Sobic008G096200 Sobic006G104100 Sobic006G104100 Sobic010G217100--Sobic006G104100 Sobic010G217100--Sobic010G144900 Sobic010G217100--Sobic009G124200 Sobic010G138500 Sobic010G138500 Sobic010G217100--Sobic010G138500 Sobic010G217100--Sobic003G003700 Sobic010G217100--Sobic009G224600 Sobic010G217100--Sobic001G468500 Sobic001G226100 Sobic001G226100 Sobic010G217100--Sobic001G226100 Sobic010G217100--Sobic006G191700 Sobic006G133700 Sobic006G133700 Sobic001G030400--Sobic006G133700 Sobic001G030400--Sobic001G468500 Sobic003G084300 Sobic003G084300 Sobic001G030400--Sobic003G084300 Sobic002G247800 Sobic002G247800 Sobic001G030400--Sobic002G247800 Sobic009G165500 Sobic009G165500 Sobic001G030400--Sobic009G165500 Sobic010G222100 Sobic010G222100 Sobic001G030400--Sobic010G222100 Sobic001G030400--Sobic007G009000 Sobic001G030400--Sobic004G331200 Sobic002G353200 Sobic002G353200 Sobic001G030400--Sobic002G353200 Sobic009G224600--Sobic010G144900 Sobic009G224600--Sobic003G084300 Sobic009G224600--Sobic010G217100 Sobic009G189200 Sobic009G189200 Sobic009G224600--Sobic009G189200 Sobic001G412500 Sobic001G412500 Sobic009G224600--Sobic001G412500 Sobic009G224600--Sobic009G124200 Sobic009G224600--Sobic006G094100 Sobic009G224600--Sobic009G165500 Sobic001G418000 Sobic001G418000 Sobic009G224600--Sobic001G418000 Sobic001G290500 Sobic001G290500 Sobic006G094100--Sobic001G290500 Sobic006G275500 Sobic006G275500 Sobic006G094100--Sobic006G275500 Sobic001G140700 Sobic001G140700 Sobic006G094100--Sobic001G140700 Sobic009G109300 Sobic009G109300 Sobic006G094100--Sobic009G109300 Sobic004G330600 Sobic004G330600 Sobic006G094100--Sobic004G330600 Sobic009G188900 Sobic009G188900 Sobic006G094100--Sobic009G188900 Sobic002G230800 Sobic002G230800 Sobic006G094100--Sobic002G230800 Sobic010G250400 Sobic010G250400 Sobic006G094100--Sobic010G250400 Sobic006G196600 Sobic006G196600 Sobic006G094100--Sobic006G196600 Sobic008G035900 Sobic008G035900 Sobic007G009000--Sobic008G035900 Sobic001G230900 Sobic001G230900 Sobic007G009000--Sobic001G230900 Sobic007G009000--Sobic001G030400 Sobic007G009000--Sobic003G003700 Sobic001G157800 Sobic001G157800 Sobic007G009000--Sobic001G157800 Sobic003G024800 Sobic003G024800 Sobic007G009000--Sobic003G024800 Sobic004G134100 Sobic004G134100 Sobic007G009000--Sobic004G134100 Sobic001G402600 Sobic001G402600 Sobic007G009000--Sobic001G402600 Sobic001G445000 Sobic001G445000 Sobic007G009000--Sobic001G445000 Sobic003G003700--Sobic001G468500 Sobic003G420100 Sobic003G420100 Sobic003G003700--Sobic003G420100 Sobic008G143000 Sobic008G143000 Sobic003G003700--Sobic008G143000 Sobic009G242501 Sobic009G242501 Sobic003G003700--Sobic009G242501 Sobic003G247600 Sobic003G247600 Sobic003G003700--Sobic003G247600 Sobic003G003700--Sobic001G528600 Sobic003G003700--Sobic008G035900 Sobic008G157000 Sobic008G157000 Sobic003G003700--Sobic008G157000 Sobic004G286700 Sobic004G286700 Sobic003G003700--Sobic004G286700 Sobic002G246900 Sobic002G246900 Sobic002G236700--Sobic002G246900 Sobic002G236700--Sobic001G140700 Sobic001G532800 Sobic001G532800 Sobic002G236700--Sobic001G532800 Sobic003G107200 Sobic003G107200 Sobic002G236700--Sobic003G107200 Sobic002G236700--Sobic009G109300 Sobic007G112100 Sobic007G112100 Sobic002G236700--Sobic007G112100 Sobic002G315400 Sobic002G315400 Sobic002G236700--Sobic002G315400 Sobic007G218100 Sobic007G218100 Sobic002G236700--Sobic007G218100 Sobic010G191000 Sobic010G191000 Sobic002G236700--Sobic010G191000 Sobic010G144900--Sobic009G189200 Sobic010G144900--Sobic006G104100 Sobic001G397000 Sobic001G397000 Sobic010G144900--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic010G144900--Sobic006G120700 Sobic009G059500 Sobic009G059500 Sobic010G144900--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic010G144900--Sobic002G186900 Sobic007G044400 Sobic007G044400 Sobic010G144900--Sobic007G044400 Sobic010G144900--Sobic002G236700 Sobic001G371100 Sobic001G371100 Sobic010G144900--Sobic001G371100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.