Gene annotation
Transcriptome id Sobic.004G268800.1
Synonym
Functional annotation nodulin, putative, expressed
UniProt A0A194YRX4
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G45370 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os02g47500.1 : nodulin, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU6Hr1G068730.4 , HORVU6Hr1G068730.1 , HORVU6Hr1G068730.2 , HORVU6Hr1G068730.3
Wheat TraesCS6D02G251700 , TraesCS6A02G271500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
2 Sobic.001G107200 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
3 Sobic.004G331200 expressed protein -
4 Sobic.002G247800 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL17 - SBP-box gene family member, expressed -
5 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
6 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
7 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8
8 Sobic.001G528600 remorin family protein, putative, expressed -
9 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
10 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
11 Sobic.001G468500 ethylene-responsive element-binding protein, putative, expressed -
12 Sobic.001G505000 cyclin-dependent kinases regulatory subunit 1, putative, expressed K02219: cyclin-dependent kinase regulatory subunit CKS1
13 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
14 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
15 Sobic.001G040300 expressed protein -
16 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
17 Sobic.005G129700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
18 Sobic.004G217450 - -
19 Sobic.010G144900 fiber protein Fb34, putative, expressed -
20 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other


Gene co-expression network
sample Sobic004G268800 Sobic004G268800 Sobic001G412500 Sobic001G412500 Sobic004G268800--Sobic001G412500 Sobic001G107200 Sobic001G107200 Sobic004G268800--Sobic001G107200 Sobic004G331200 Sobic004G331200 Sobic004G268800--Sobic004G331200 Sobic002G247800 Sobic002G247800 Sobic004G268800--Sobic002G247800 Sobic001G517600 Sobic001G517600 Sobic004G268800--Sobic001G517600 Sobic004G047500 Sobic004G047500 Sobic004G268800--Sobic004G047500 Sobic002G162300 Sobic002G162300 Sobic004G268800--Sobic002G162300 Sobic001G528600 Sobic001G528600 Sobic004G268800--Sobic001G528600 Sobic003G011100 Sobic003G011100 Sobic004G268800--Sobic003G011100 Sobic009G165500 Sobic009G165500 Sobic001G412500--Sobic009G165500 Sobic003G084300 Sobic003G084300 Sobic001G412500--Sobic003G084300 Sobic004G343600 Sobic004G343600 Sobic001G412500--Sobic004G343600 Sobic006G013900 Sobic006G013900 Sobic001G412500--Sobic006G013900 Sobic004G208100 Sobic004G208100 Sobic001G412500--Sobic004G208100 Sobic001G107300 Sobic001G107300 Sobic001G412500--Sobic001G107300 Sobic001G150033 Sobic001G150033 Sobic001G412500--Sobic001G150033 Sobic001G261549 Sobic001G261549 Sobic001G412500--Sobic001G261549 Sobic001G412500--Sobic001G528600 Sobic001G107200--Sobic001G528600 Sobic006G191700 Sobic006G191700 Sobic001G107200--Sobic006G191700 Sobic001G107100 Sobic001G107100 Sobic001G107200--Sobic001G107100 Sobic002G350400 Sobic002G350400 Sobic001G107200--Sobic002G350400 Sobic005G047100 Sobic005G047100 Sobic001G107200--Sobic005G047100 Sobic007G094400 Sobic007G094400 Sobic001G107200--Sobic007G094400 Sobic003G250700 Sobic003G250700 Sobic001G107200--Sobic003G250700 Sobic001G107200--Sobic003G011100 Sobic006G278100 Sobic006G278100 Sobic001G107200--Sobic006G278100 Sobic001G289900 Sobic001G289900 Sobic004G331200--Sobic001G289900 Sobic010G105400 Sobic010G105400 Sobic004G331200--Sobic010G105400 Sobic001G078600 Sobic001G078600 Sobic004G331200--Sobic001G078600 Sobic004G331200--Sobic001G528600 Sobic004G331200--Sobic006G191700 Sobic001G468500 Sobic001G468500 Sobic004G331200--Sobic001G468500 Sobic003G444300 Sobic003G444300 Sobic004G331200--Sobic003G444300 Sobic001G255600 Sobic001G255600 Sobic004G331200--Sobic001G255600 Sobic008G096200 Sobic008G096200 Sobic004G331200--Sobic008G096200 Sobic007G225400 Sobic007G225400 Sobic002G247800--Sobic007G225400 Sobic002G179150 Sobic002G179150 Sobic002G247800--Sobic002G179150 Sobic004G170900 Sobic004G170900 Sobic002G247800--Sobic004G170900 Sobic001G470100 Sobic001G470100 Sobic002G247800--Sobic001G470100 Sobic005G142500 Sobic005G142500 Sobic002G247800--Sobic005G142500 Sobic004G285900 Sobic004G285900 Sobic002G247800--Sobic004G285900 Sobic001G030400 Sobic001G030400 Sobic002G247800--Sobic001G030400 Sobic010G159100 Sobic010G159100 Sobic002G247800--Sobic010G159100 Sobic002G247800--Sobic003G011100 Sobic001G436200 Sobic001G436200 Sobic001G517600--Sobic001G436200 Sobic002G373800 Sobic002G373800 Sobic001G517600--Sobic002G373800 Sobic003G109600 Sobic003G109600 Sobic001G517600--Sobic003G109600 Sobic004G032000 Sobic004G032000 Sobic001G517600--Sobic004G032000 Sobic002G406500 Sobic002G406500 Sobic001G517600--Sobic002G406500 Sobic005G050500 Sobic005G050500 Sobic001G517600--Sobic005G050500 Sobic002G379500 Sobic002G379500 Sobic001G517600--Sobic002G379500 Sobic008G098800 Sobic008G098800 Sobic001G517600--Sobic008G098800 Sobic006G138100 Sobic006G138100 Sobic001G517600--Sobic006G138100 Sobic004G047500--Sobic001G107300 Sobic001G371100 Sobic001G371100 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic002G162300--Sobic001G078600 Sobic002G162300--Sobic004G285900 Sobic006G081800 Sobic006G081800 Sobic002G162300--Sobic006G081800 Sobic006G102900 Sobic006G102900 Sobic002G162300--Sobic006G102900 Sobic006G138900 Sobic006G138900 Sobic002G162300--Sobic006G138900 Sobic009G120700 Sobic009G120700 Sobic002G162300--Sobic009G120700 Sobic002G162300--Sobic001G261549 Sobic001G401600 Sobic001G401600 Sobic002G162300--Sobic001G401600 Sobic004G279601 Sobic004G279601 Sobic002G162300--Sobic004G279601 Sobic001G528600--Sobic001G078600 Sobic001G528600--Sobic001G107200 Sobic002G280700 Sobic002G280700 Sobic001G528600--Sobic002G280700 Sobic004G152200 Sobic004G152200 Sobic001G528600--Sobic004G152200 Sobic001G528600--Sobic006G191700 Sobic010G274000 Sobic010G274000 Sobic001G528600--Sobic010G274000 Sobic001G528600--Sobic004G331200 Sobic001G528600--Sobic005G047100 Sobic001G528600--Sobic006G102900 Sobic007G150800 Sobic007G150800 Sobic003G011100--Sobic007G150800 Sobic006G216600 Sobic006G216600 Sobic003G011100--Sobic006G216600 Sobic001G475500 Sobic001G475500 Sobic003G011100--Sobic001G475500 Sobic006G201500 Sobic006G201500 Sobic003G011100--Sobic006G201500 Sobic003G396600 Sobic003G396600 Sobic003G011100--Sobic003G396600 Sobic009G144300 Sobic009G144300 Sobic003G011100--Sobic009G144300 Sobic006G115000 Sobic006G115000 Sobic003G011100--Sobic006G115000 Sobic003G387900 Sobic003G387900 Sobic003G011100--Sobic003G387900 Sobic009G233400 Sobic009G233400 Sobic003G011100--Sobic009G233400
Octagon: transcription factors


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