Gene annotation
Transcriptome id Sobic.004G211100.1
Synonym AtLa1, Sb04g025650, La1
Functional annotation RNA binding protein, putative, expressed
UniProt C5XXA7
Pfam PF00076 PF05383 PF08777
Panther DB PTHR22792 PTHR22792:SF64
NCBI CDD KOG4213; RNA-binding protein La
KEGG Orthology K11090; LA, lupus La protein
Gene Ontology GO:0003676; nucleic acid binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT4G32720 : La protein 1
RAP-DB (Rice) LOC_Os02g39700.1 : RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a009533 , Zm00025a010935 , Zm00025a021218 , Zm00025a034082 , Zm00025a008073
Brachypodium KQK00283 , KQK00282 , KQJ83375 , KQJ83386
Barley HORVU2Hr1G085880.2 , HORVU2Hr1G085880.1 , HORVU2Hr1G085880.4
Wheat TraesCS2A02G352500 , TraesCS2B02G371800 , TraesCS2D02G351700
Populus -


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cDNA sequences
Sobic.004G211100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
2 Sobic.002G263700 bromodomain protein 103, putative, expressed -
3 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
4 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
5 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
6 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
7 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
8 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1
9 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
10 Sobic.003G321900 CDP-alcohol phosphatidyltransferase, putative, expressed K08744: cardiolipin synthase (CMP-forming)
11 Sobic.007G217100 sas10/Utp3 family protein, expressed K14767: UTP3, U3 small nucleolar RNA-associated protein 3
12 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
13 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
14 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
15 Sobic.010G114900 expressed protein -
16 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
17 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
18 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
19 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -


Gene co-expression network
sample Sobic004G211100 Sobic004G211100 Sobic001G008200 Sobic001G008200 Sobic004G211100--Sobic001G008200 Sobic002G263700 Sobic002G263700 Sobic004G211100--Sobic002G263700 Sobic001G145400 Sobic001G145400 Sobic004G211100--Sobic001G145400 Sobic006G125900 Sobic006G125900 Sobic004G211100--Sobic006G125900 Sobic002G399200 Sobic002G399200 Sobic004G211100--Sobic002G399200 Sobic004G309900 Sobic004G309900 Sobic004G211100--Sobic004G309900 Sobic008G103300 Sobic008G103300 Sobic004G211100--Sobic008G103300 Sobic006G270600 Sobic006G270600 Sobic004G211100--Sobic006G270600 Sobic001G259000 Sobic001G259000 Sobic004G211100--Sobic001G259000 Sobic001G008200--Sobic004G309900 Sobic005G172500 Sobic005G172500 Sobic001G008200--Sobic005G172500 Sobic001G227400 Sobic001G227400 Sobic001G008200--Sobic001G227400 Sobic001G493200 Sobic001G493200 Sobic001G008200--Sobic001G493200 Sobic003G133900 Sobic003G133900 Sobic001G008200--Sobic003G133900 Sobic006G240100 Sobic006G240100 Sobic001G008200--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic001G008200--Sobic004G155600 Sobic001G473600 Sobic001G473600 Sobic001G008200--Sobic001G473600 Sobic001G008200--Sobic001G145400 Sobic010G269300 Sobic010G269300 Sobic002G263700--Sobic010G269300 Sobic004G141800 Sobic004G141800 Sobic002G263700--Sobic004G141800 Sobic004G285000 Sobic004G285000 Sobic002G263700--Sobic004G285000 Sobic004G111000 Sobic004G111000 Sobic002G263700--Sobic004G111000 Sobic002G063900 Sobic002G063900 Sobic002G263700--Sobic002G063900 Sobic006G280100 Sobic006G280100 Sobic002G263700--Sobic006G280100 Sobic006G245900 Sobic006G245900 Sobic002G263700--Sobic006G245900 Sobic003G016500 Sobic003G016500 Sobic002G263700--Sobic003G016500 Sobic002G263700--Sobic004G309900 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic001G453400 Sobic001G453400 Sobic006G125900--Sobic001G453400 Sobic006G125900--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic006G125900--Sobic001G052400 Sobic008G051200 Sobic008G051200 Sobic006G125900--Sobic008G051200 Sobic010G174700 Sobic010G174700 Sobic006G125900--Sobic010G174700 Sobic001G429600 Sobic001G429600 Sobic006G125900--Sobic001G429600 Sobic006G125900--Sobic004G340400 Sobic007G217100 Sobic007G217100 Sobic006G125900--Sobic007G217100 Sobic010G003400 Sobic010G003400 Sobic006G125900--Sobic010G003400 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic008G163500 Sobic008G163500 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic004G309900--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G309900--Sobic003G416700 Sobic004G309900--Sobic001G008200 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic002G371700 Sobic002G371700 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic006G270600--Sobic004G155600 Sobic006G270600--Sobic003G132000 Sobic006G270600--Sobic001G259000 Sobic010G264000 Sobic010G264000 Sobic006G270600--Sobic010G264000 Sobic006G270600--Sobic002G295500 Sobic009G131900 Sobic009G131900 Sobic006G270600--Sobic009G131900 Sobic006G014100 Sobic006G014100 Sobic006G270600--Sobic006G014100 Sobic001G492200 Sobic001G492200 Sobic006G270600--Sobic001G492200 Sobic006G270600--Sobic001G114500 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700
Octagon: transcription factors


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