Gene annotation
Transcriptome id Sobic.003G420000.1
Synonym Sb03g045330, MEF11, LOI1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide repeat domain containing protein, putative, expressed
UniProt A0A1B6Q845
Pfam PF13041 PF14432 PF01535 PF13812
Panther DB PTHR24015:SF116 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14850 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g37330.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015799
Brachypodium PNT63467 , PNT63466 , PNT63465 , PNT63464 , PNT63468 , KQJ88192 , KQJ88193
Barley HORVU6Hr1G028180.3 , HORVU6Hr1G028180.2 , HORVU6Hr1G028180.7 , HORVU6Hr1G028180.5 , HORVU6Hr1G028180.1 , HORVU6Hr1G028180.6 , HORVU6Hr1G028180.8 , HORVU5Hr1G008310.2 , HORVU5Hr1G008310.1 , HORVU6Hr1G028180.4
Wheat TraesCS6A02G144000 , TraesCS6B02G172400 , TraesCS6D02G133200
Populus -


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cDNA sequences
Sobic.003G420000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G067201 - -
2 Sobic.001G261585 - -
3 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
5 Sobic.004G149800 transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters(PubMedID : 23184965)@hhH-GPD superfamily base excision DNA repair protein, expressed -
6 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
7 Sobic.005G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
8 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
10 Sobic.010G091500 pentatricopeptide, putative, expressed -
11 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
12 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
13 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.001G009400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
16 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
17 Sobic.001G033600 pentatricopeptide, putative, expressed -
18 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.010G190900 pentatricopeptide, putative, expressed -
20 Sobic.008G152300 expressed protein K15208: snRNA-activating protein complex subunit 1


Gene co-expression network
sample Sobic003G420000 Sobic003G420000 Sobic003G067201 Sobic003G067201 Sobic003G420000--Sobic003G067201 Sobic001G261585 Sobic001G261585 Sobic003G420000--Sobic001G261585 Sobic004G030600 Sobic004G030600 Sobic003G420000--Sobic004G030600 Sobic001G187800 Sobic001G187800 Sobic003G420000--Sobic001G187800 Sobic004G149800 Sobic004G149800 Sobic003G420000--Sobic004G149800 Sobic004G217900 Sobic004G217900 Sobic003G420000--Sobic004G217900 Sobic005G168300 Sobic005G168300 Sobic003G420000--Sobic005G168300 Sobic008G082800 Sobic008G082800 Sobic003G420000--Sobic008G082800 Sobic001G088900 Sobic001G088900 Sobic003G420000--Sobic001G088900 Sobic003G397100 Sobic003G397100 Sobic003G067201--Sobic003G397100 Sobic006G191200 Sobic006G191200 Sobic003G067201--Sobic006G191200 Sobic001G448100 Sobic001G448100 Sobic003G067201--Sobic001G448100 Sobic003G359400 Sobic003G359400 Sobic003G067201--Sobic003G359400 Sobic002G084400 Sobic002G084400 Sobic003G067201--Sobic002G084400 Sobic003G124600 Sobic003G124600 Sobic003G067201--Sobic003G124600 Sobic002G079100 Sobic002G079100 Sobic003G067201--Sobic002G079100 Sobic010G143600 Sobic010G143600 Sobic003G067201--Sobic010G143600 Sobic010G091500 Sobic010G091500 Sobic003G067201--Sobic010G091500 Sobic001G261585--Sobic001G088900 Sobic009G253400 Sobic009G253400 Sobic001G261585--Sobic009G253400 Sobic001G261585--Sobic003G420000 Sobic001G367100 Sobic001G367100 Sobic001G261585--Sobic001G367100 Sobic009G235200 Sobic009G235200 Sobic001G261585--Sobic009G235200 Sobic006G059500 Sobic006G059500 Sobic001G261585--Sobic006G059500 Sobic001G261585--Sobic005G168300 Sobic007G030000 Sobic007G030000 Sobic001G261585--Sobic007G030000 Sobic001G261585--Sobic001G187800 Sobic001G033600 Sobic001G033600 Sobic004G030600--Sobic001G033600 Sobic008G031200 Sobic008G031200 Sobic004G030600--Sobic008G031200 Sobic006G143200 Sobic006G143200 Sobic004G030600--Sobic006G143200 Sobic002G362200 Sobic002G362200 Sobic004G030600--Sobic002G362200 Sobic004G027700 Sobic004G027700 Sobic004G030600--Sobic004G027700 Sobic004G030600--Sobic002G084400 Sobic006G085800 Sobic006G085800 Sobic004G030600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic004G030600--Sobic010G068900 Sobic004G030600--Sobic003G067201 Sobic001G009400 Sobic001G009400 Sobic001G187800--Sobic001G009400 Sobic009G155400 Sobic009G155400 Sobic001G187800--Sobic009G155400 Sobic001G187800--Sobic001G448100 Sobic006G111200 Sobic006G111200 Sobic001G187800--Sobic006G111200 Sobic001G187800--Sobic004G217900 Sobic006G262700 Sobic006G262700 Sobic001G187800--Sobic006G262700 Sobic009G108400 Sobic009G108400 Sobic001G187800--Sobic009G108400 Sobic001G347100 Sobic001G347100 Sobic001G187800--Sobic001G347100 Sobic005G011000 Sobic005G011000 Sobic001G187800--Sobic005G011000 Sobic009G074700 Sobic009G074700 Sobic004G149800--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic004G149800--Sobic006G028700 Sobic004G149800--Sobic001G088900 Sobic009G213100 Sobic009G213100 Sobic004G149800--Sobic009G213100 Sobic009G000400 Sobic009G000400 Sobic004G149800--Sobic009G000400 Sobic005G199200 Sobic005G199200 Sobic004G149800--Sobic005G199200 Sobic006G131200 Sobic006G131200 Sobic004G149800--Sobic006G131200 Sobic004G128200 Sobic004G128200 Sobic004G149800--Sobic004G128200 Sobic010G278600 Sobic010G278600 Sobic004G149800--Sobic010G278600 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic003G051500 Sobic003G051500 Sobic004G217900--Sobic003G051500 Sobic004G241000 Sobic004G241000 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic001G149100 Sobic001G149100 Sobic004G217900--Sobic001G149100 Sobic004G266300 Sobic004G266300 Sobic005G168300--Sobic004G266300 Sobic010G256000 Sobic010G256000 Sobic005G168300--Sobic010G256000 Sobic006G073100 Sobic006G073100 Sobic005G168300--Sobic006G073100 Sobic005G168300--Sobic003G420000 Sobic005G168300--Sobic009G253400 Sobic002G218700 Sobic002G218700 Sobic005G168300--Sobic002G218700 Sobic005G168300--Sobic001G187800 Sobic005G168300--Sobic004G217900 Sobic004G227500 Sobic004G227500 Sobic005G168300--Sobic004G227500 Sobic002G172500 Sobic002G172500 Sobic008G082800--Sobic002G172500 Sobic004G256900 Sobic004G256900 Sobic008G082800--Sobic004G256900 Sobic001G478900 Sobic001G478900 Sobic008G082800--Sobic001G478900 Sobic003G184300 Sobic003G184300 Sobic008G082800--Sobic003G184300 Sobic008G082800--Sobic010G068900 Sobic008G082800--Sobic009G155400 Sobic006G085900 Sobic006G085900 Sobic008G082800--Sobic006G085900 Sobic009G063500 Sobic009G063500 Sobic008G082800--Sobic009G063500 Sobic006G262800 Sobic006G262800 Sobic008G082800--Sobic006G262800 Sobic010G279900 Sobic010G279900 Sobic001G088900--Sobic010G279900 Sobic001G245900 Sobic001G245900 Sobic001G088900--Sobic001G245900 Sobic001G088900--Sobic001G367100 Sobic006G180700 Sobic006G180700 Sobic001G088900--Sobic006G180700 Sobic001G088900--Sobic009G000400 Sobic001G034500 Sobic001G034500 Sobic001G088900--Sobic001G034500 Sobic010G269300 Sobic010G269300 Sobic001G088900--Sobic010G269300 Sobic001G222000 Sobic001G222000 Sobic001G088900--Sobic001G222000 Sobic001G088900--Sobic001G261585
Octagon: transcription factors


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