Gene annotation
Transcriptome id Sobic.007G030000.1
Synonym Sb07g002620
Functional annotation pentatricopeptide, putative, expressed
UniProt Q8W0R9
Pfam PF13812 PF12854 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF284
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53600 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g03676.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a055287
Brachypodium KQJ94963
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G109400 pentatricopeptide, putative, expressed -
2 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
3 Sobic.002G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
5 Sobic.008G171500 PPR repeat containing protein, expressed -
6 Sobic.001G049800 DDT domain containing protein, putative, expressed -
7 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
8 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
9 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
10 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
11 Sobic.007G179600 pentatricopeptide, putative, expressed -
12 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
13 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
14 Sobic.003G014700 pentatricopeptide, putative, expressed -
15 Sobic.010G091500 pentatricopeptide, putative, expressed -
16 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G261585 - -
18 Sobic.008G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
19 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
20 Sobic.003G067201 - -


Gene co-expression network
sample Sobic007G030000 Sobic007G030000 Sobic006G109400 Sobic006G109400 Sobic007G030000--Sobic006G109400 Sobic006G111200 Sobic006G111200 Sobic007G030000--Sobic006G111200 Sobic002G084400 Sobic002G084400 Sobic007G030000--Sobic002G084400 Sobic002G172500 Sobic002G172500 Sobic007G030000--Sobic002G172500 Sobic008G171500 Sobic008G171500 Sobic007G030000--Sobic008G171500 Sobic001G049800 Sobic001G049800 Sobic007G030000--Sobic001G049800 Sobic003G322200 Sobic003G322200 Sobic007G030000--Sobic003G322200 Sobic002G378100 Sobic002G378100 Sobic007G030000--Sobic002G378100 Sobic010G153300 Sobic010G153300 Sobic007G030000--Sobic010G153300 Sobic006G109400--Sobic007G030000 Sobic001G347100 Sobic001G347100 Sobic006G109400--Sobic001G347100 Sobic008G099900 Sobic008G099900 Sobic006G109400--Sobic008G099900 Sobic006G069100 Sobic006G069100 Sobic006G109400--Sobic006G069100 Sobic001G408300 Sobic001G408300 Sobic006G109400--Sobic001G408300 Sobic010G038800 Sobic010G038800 Sobic006G109400--Sobic010G038800 Sobic010G277200 Sobic010G277200 Sobic006G109400--Sobic010G277200 Sobic009G155400 Sobic009G155400 Sobic006G109400--Sobic009G155400 Sobic005G210700 Sobic005G210700 Sobic006G109400--Sobic005G210700 Sobic001G453500 Sobic001G453500 Sobic006G111200--Sobic001G453500 Sobic004G151000 Sobic004G151000 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic007G060600 Sobic007G060600 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G059500 Sobic006G059500 Sobic006G111200--Sobic006G059500 Sobic007G059700 Sobic007G059700 Sobic006G111200--Sobic007G059700 Sobic010G232700 Sobic010G232700 Sobic002G084400--Sobic010G232700 Sobic008G041000 Sobic008G041000 Sobic002G084400--Sobic008G041000 Sobic006G085900 Sobic006G085900 Sobic002G084400--Sobic006G085900 Sobic002G251800 Sobic002G251800 Sobic002G084400--Sobic002G251800 Sobic005G028300 Sobic005G028300 Sobic002G084400--Sobic005G028300 Sobic002G084400--Sobic006G069100 Sobic008G031200 Sobic008G031200 Sobic002G084400--Sobic008G031200 Sobic002G084400--Sobic008G171500 Sobic003G067201 Sobic003G067201 Sobic002G084400--Sobic003G067201 Sobic010G068900 Sobic010G068900 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic004G256900 Sobic004G256900 Sobic002G172500--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic002G172500--Sobic006G262800 Sobic004G241000 Sobic004G241000 Sobic002G172500--Sobic004G241000 Sobic002G172500--Sobic006G085900 Sobic002G172500--Sobic009G155400 Sobic003G184300 Sobic003G184300 Sobic002G172500--Sobic003G184300 Sobic008G163400 Sobic008G163400 Sobic002G172500--Sobic008G163400 Sobic008G171500--Sobic004G256900 Sobic008G171500--Sobic002G084400 Sobic002G362200 Sobic002G362200 Sobic008G171500--Sobic002G362200 Sobic008G171500--Sobic010G232700 Sobic008G171500--Sobic008G031200 Sobic008G171500--Sobic002G172500 Sobic008G171500--Sobic004G241000 Sobic008G171500--Sobic003G184300 Sobic008G171500--Sobic006G069100 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic001G372800 Sobic001G372800 Sobic003G322200--Sobic001G372800 Sobic001G401400 Sobic001G401400 Sobic003G322200--Sobic001G401400 Sobic003G123200 Sobic003G123200 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic009G191500 Sobic009G191500 Sobic010G153300--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic010G153300--Sobic004G215900 Sobic010G097500 Sobic010G097500 Sobic010G153300--Sobic010G097500 Sobic010G153300--Sobic010G038800 Sobic002G043000 Sobic002G043000 Sobic010G153300--Sobic002G043000 Sobic010G153300--Sobic007G059700 Sobic008G068100 Sobic008G068100 Sobic010G153300--Sobic008G068100 Sobic005G098000 Sobic005G098000 Sobic010G153300--Sobic005G098000 Sobic006G206200 Sobic006G206200 Sobic010G153300--Sobic006G206200
Octagon: transcription factors


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