Gene annotation
Transcriptome id Sobic.007G032100.1
Synonym Sb07g002780, PDF2
Functional annotation homeobox and START domains containing protein, putative, expressed
UniProt Q8W0T5 , C5YMY2
Pfam PF00046 PF01852
Panther DB PTHR24326 PTHR24326:SF294
NCBI CDD KOG0484; Transcription factor PHOX2/ARIX, contains HOX domain
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT4G04890 : protodermal factor 2
RAP-DB (Rice) LOC_Os08g04190.1 : homeobox and START domains containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a054779 , Zm00025a055280
Brachypodium PNT66595 , KQJ95130 , KQJ94986 , KQJ95129 , KQJ95128
Barley HORVU7Hr1G073440.4 , HORVU7Hr1G073440.3 , HORVU7Hr1G073450.1 , HORVU7Hr1G073450.2 , HORVU7Hr1G073450.3 , HORVU7Hr1G073450.4 , HORVU7Hr1G073450.5 , HORVU7Hr1G073440.5 , HORVU7Hr1G073440.2 , HORVU7Hr1G073440.1
Wheat TraesCS2A02G474000 , TraesCS7A02G308400 , TraesCS2D02G473700 , TraesCS7D02G305200 , TraesCS6B02G354900 , TraesCS6B02G354900 , TraesCS6B02G354900 , TraesCS7B02G208600 , TraesCS6A02G324500 , TraesCS7D02G305200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
2 Sobic.007G065300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
3 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
5 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
6 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
7 Sobic.001G199400 monocopper oxidase, putative, expressed -
8 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
10 Sobic.010G276600 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
11 Sobic.006G058000 OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
12 Sobic.001G493900 beta-galactosidase, putative, expressed -
13 Sobic.010G235300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
14 Sobic.004G211700 - -
15 Sobic.008G097700 transmembrane amino acid transporter protein, putative, expressed -
16 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
17 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
18 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
19 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
20 Sobic.003G019900 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic007G032100 Sobic007G032100 Sobic001G286700 Sobic001G286700 Sobic007G032100--Sobic001G286700 Sobic007G065300 Sobic007G065300 Sobic007G032100--Sobic007G065300 Sobic001G470200 Sobic001G470200 Sobic007G032100--Sobic001G470200 Sobic001G434100 Sobic001G434100 Sobic007G032100--Sobic001G434100 Sobic007G165800 Sobic007G165800 Sobic007G032100--Sobic007G165800 Sobic005G032600 Sobic005G032600 Sobic007G032100--Sobic005G032600 Sobic001G199400 Sobic001G199400 Sobic007G032100--Sobic001G199400 Sobic003G338700 Sobic003G338700 Sobic007G032100--Sobic003G338700 Sobic004G274600 Sobic004G274600 Sobic007G032100--Sobic004G274600 Sobic010G235300 Sobic010G235300 Sobic001G286700--Sobic010G235300 Sobic003G027100 Sobic003G027100 Sobic001G286700--Sobic003G027100 Sobic002G363300 Sobic002G363300 Sobic001G286700--Sobic002G363300 Sobic004G211700 Sobic004G211700 Sobic001G286700--Sobic004G211700 Sobic006G273600 Sobic006G273600 Sobic001G286700--Sobic006G273600 Sobic001G473500 Sobic001G473500 Sobic001G286700--Sobic001G473500 Sobic001G286700--Sobic003G338700 Sobic005G199700 Sobic005G199700 Sobic001G286700--Sobic005G199700 Sobic001G286700--Sobic007G165800 Sobic008G038200 Sobic008G038200 Sobic007G065300--Sobic008G038200 Sobic007G065300--Sobic007G032100 Sobic007G065300--Sobic007G165800 Sobic002G098500 Sobic002G098500 Sobic007G065300--Sobic002G098500 Sobic007G065300--Sobic001G434100 Sobic010G020600 Sobic010G020600 Sobic007G065300--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic007G065300--Sobic001G221900 Sobic009G235700 Sobic009G235700 Sobic007G065300--Sobic009G235700 Sobic001G298800 Sobic001G298800 Sobic007G065300--Sobic001G298800 Sobic004G357000 Sobic004G357000 Sobic001G470200--Sobic004G357000 Sobic004G317200 Sobic004G317200 Sobic001G470200--Sobic004G317200 Sobic001G470200--Sobic010G020600 Sobic001G470200--Sobic007G032100 Sobic001G470200--Sobic007G165800 Sobic001G470200--Sobic004G274600 Sobic003G089300 Sobic003G089300 Sobic001G470200--Sobic003G089300 Sobic008G097700 Sobic008G097700 Sobic001G470200--Sobic008G097700 Sobic001G470200--Sobic001G434100 Sobic001G434100--Sobic007G165800 Sobic001G434100--Sobic004G274600 Sobic001G434100--Sobic001G286700 Sobic001G434100--Sobic003G027100 Sobic001G434100--Sobic001G199400 Sobic001G434100--Sobic001G470200 Sobic001G434100--Sobic007G032100 Sobic001G434100--Sobic010G235300 Sobic001G434100--Sobic004G357000 Sobic007G165800--Sobic004G274600 Sobic007G165800--Sobic001G434100 Sobic007G180200 Sobic007G180200 Sobic007G165800--Sobic007G180200 Sobic007G165800--Sobic001G286700 Sobic007G165800--Sobic003G027100 Sobic007G165800--Sobic010G235300 Sobic007G165800--Sobic001G199400 Sobic007G170100 Sobic007G170100 Sobic007G165800--Sobic007G170100 Sobic007G165800--Sobic003G338700 Sobic002G027600 Sobic002G027600 Sobic005G032600--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic005G032600--Sobic004G267600 Sobic001G079900 Sobic001G079900 Sobic005G032600--Sobic001G079900 Sobic003G019900 Sobic003G019900 Sobic005G032600--Sobic003G019900 Sobic006G272800 Sobic006G272800 Sobic005G032600--Sobic006G272800 Sobic001G493900 Sobic001G493900 Sobic005G032600--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic005G032600--Sobic008G151600 Sobic003G351900 Sobic003G351900 Sobic005G032600--Sobic003G351900 Sobic005G032600--Sobic007G032100 Sobic010G014700 Sobic010G014700 Sobic001G199400--Sobic010G014700 Sobic003G113500 Sobic003G113500 Sobic001G199400--Sobic003G113500 Sobic001G199400--Sobic003G027100 Sobic001G199400--Sobic003G338700 Sobic001G199400--Sobic007G165800 Sobic010G078700 Sobic010G078700 Sobic001G199400--Sobic010G078700 Sobic003G070600 Sobic003G070600 Sobic001G199400--Sobic003G070600 Sobic001G199400--Sobic007G180200 Sobic001G074000 Sobic001G074000 Sobic001G199400--Sobic001G074000 Sobic009G146700 Sobic009G146700 Sobic003G338700--Sobic009G146700 Sobic003G338700--Sobic005G199700 Sobic010G014500 Sobic010G014500 Sobic003G338700--Sobic010G014500 Sobic003G338700--Sobic010G014700 Sobic003G338700--Sobic002G363300 Sobic003G338700--Sobic001G286700 Sobic003G338700--Sobic007G180200 Sobic003G338700--Sobic001G199400 Sobic003G338700--Sobic003G019900 Sobic004G274600--Sobic007G165800 Sobic004G274600--Sobic004G211700 Sobic004G274600--Sobic001G434100 Sobic004G274600--Sobic001G286700 Sobic001G207600 Sobic001G207600 Sobic004G274600--Sobic001G207600 Sobic004G274600--Sobic008G097700 Sobic008G008100 Sobic008G008100 Sobic004G274600--Sobic008G008100 Sobic004G274600--Sobic003G027100 Sobic003G298700 Sobic003G298700 Sobic004G274600--Sobic003G298700
Octagon: transcription factors


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