Gene annotation
Transcriptome id Sobic.007G065300.1
Synonym ATML1, Sb07g005180
Functional annotation homeobox and START domains containing protein, putative, expressed
UniProt C5YI05
Pfam PF00046 PF01852
Panther DB PTHR24326 PTHR24326:SF239
NCBI CDD -
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding GO:0008289lipid binding


Orthologs (automatic annotation)
TAIR AT4G04890 : protodermal factor 2
RAP-DB (Rice) LOC_Os08g08820.2 : homeobox and START domains containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a054779 , Zm00025a057079 , Zm00025a029982 , Zm00025a009692 , Zm00025a055280
Brachypodium KQJ84752 , KQJ84753 , KQJ84751 , KQJ95130 , KQJ95129 , KQJ95128 , PNT61898
Barley HORVU7Hr1G073440.4 , HORVU7Hr1G073440.1 , HORVU7Hr1G073450.1 , HORVU7Hr1G073450.2 , HORVU7Hr1G073450.3 , HORVU7Hr1G073450.4 , HORVU7Hr1G073450.5 , HORVU2Hr1G106970.4 , HORVU2Hr1G106970.5 , HORVU2Hr1G106970.7 , HORVU2Hr1G106970.6 , HORVU2Hr1G106970.1 , HORVU2Hr1G106970.3 , HORVU2Hr1G106970.2 , HORVU7Hr1G073440.5 , HORVU7Hr1G073440.3 , HORVU7Hr1G073440.2
Wheat TraesCS2A02G474000 , TraesCS2B02G497500 , TraesCS2D02G473700 , TraesCS7D02G305200 , TraesCS7D02G305200 , TraesCS7A02G308400
Populus PNT51185 , PNT05023 , PNT05022 , PNT05021 , PNT05024


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
2 Sobic.007G032100 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
3 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
4 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
5 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
6 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
7 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
8 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
9 Sobic.001G298800 ternary complex factor MIP1, putative, expressed -
10 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
11 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
12 Sobic.001G074000 receptor protein kinase CLAVATA1 precursor, putative, expressed -
13 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
14 Sobic.010G014500 aspartic protease, putative, expressed -
15 Sobic.010G078700 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.003G070600 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
17 Sobic.001G518000 protein kinase, putative, expressed -
18 Sobic.001G199400 monocopper oxidase, putative, expressed -
19 Sobic.003G096300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
20 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G065300 Sobic007G065300 Sobic008G038200 Sobic008G038200 Sobic007G065300--Sobic008G038200 Sobic007G032100 Sobic007G032100 Sobic007G065300--Sobic007G032100 Sobic007G165800 Sobic007G165800 Sobic007G065300--Sobic007G165800 Sobic002G098500 Sobic002G098500 Sobic007G065300--Sobic002G098500 Sobic001G434100 Sobic001G434100 Sobic007G065300--Sobic001G434100 Sobic010G020600 Sobic010G020600 Sobic007G065300--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic007G065300--Sobic001G221900 Sobic009G235700 Sobic009G235700 Sobic007G065300--Sobic009G235700 Sobic001G298800 Sobic001G298800 Sobic007G065300--Sobic001G298800 Sobic008G038200--Sobic007G065300 Sobic008G038200--Sobic002G098500 Sobic008G038200--Sobic001G298800 Sobic003G096300 Sobic003G096300 Sobic008G038200--Sobic003G096300 Sobic001G518000 Sobic001G518000 Sobic008G038200--Sobic001G518000 Sobic006G241800 Sobic006G241800 Sobic008G038200--Sobic006G241800 Sobic003G177000 Sobic003G177000 Sobic008G038200--Sobic003G177000 Sobic010G135300 Sobic010G135300 Sobic008G038200--Sobic010G135300 Sobic007G128100 Sobic007G128100 Sobic008G038200--Sobic007G128100 Sobic001G286700 Sobic001G286700 Sobic007G032100--Sobic001G286700 Sobic007G032100--Sobic007G065300 Sobic001G470200 Sobic001G470200 Sobic007G032100--Sobic001G470200 Sobic007G032100--Sobic001G434100 Sobic007G032100--Sobic007G165800 Sobic005G032600 Sobic005G032600 Sobic007G032100--Sobic005G032600 Sobic001G199400 Sobic001G199400 Sobic007G032100--Sobic001G199400 Sobic003G338700 Sobic003G338700 Sobic007G032100--Sobic003G338700 Sobic004G274600 Sobic004G274600 Sobic007G032100--Sobic004G274600 Sobic007G165800--Sobic004G274600 Sobic007G165800--Sobic001G434100 Sobic007G180200 Sobic007G180200 Sobic007G165800--Sobic007G180200 Sobic007G165800--Sobic001G286700 Sobic003G027100 Sobic003G027100 Sobic007G165800--Sobic003G027100 Sobic010G235300 Sobic010G235300 Sobic007G165800--Sobic010G235300 Sobic007G165800--Sobic001G199400 Sobic007G170100 Sobic007G170100 Sobic007G165800--Sobic007G170100 Sobic007G165800--Sobic003G338700 Sobic002G098500--Sobic008G038200 Sobic002G098500--Sobic007G065300 Sobic002G098500--Sobic003G096300 Sobic005G204100 Sobic005G204100 Sobic002G098500--Sobic005G204100 Sobic002G098500--Sobic010G135300 Sobic002G098500--Sobic010G020600 Sobic002G216600 Sobic002G216600 Sobic002G098500--Sobic002G216600 Sobic002G098500--Sobic001G221900 Sobic002G098500--Sobic007G032100 Sobic001G434100--Sobic007G165800 Sobic001G434100--Sobic004G274600 Sobic001G434100--Sobic001G286700 Sobic001G434100--Sobic003G027100 Sobic001G434100--Sobic001G199400 Sobic001G434100--Sobic001G470200 Sobic001G434100--Sobic007G032100 Sobic001G434100--Sobic010G235300 Sobic004G357000 Sobic004G357000 Sobic001G434100--Sobic004G357000 Sobic004G317200 Sobic004G317200 Sobic010G020600--Sobic004G317200 Sobic004G248100 Sobic004G248100 Sobic010G020600--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic010G020600--Sobic003G339600 Sobic003G070600 Sobic003G070600 Sobic010G020600--Sobic003G070600 Sobic010G020600--Sobic009G235700 Sobic007G160300 Sobic007G160300 Sobic010G020600--Sobic007G160300 Sobic003G018700 Sobic003G018700 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic010G020600--Sobic001G221900 Sobic001G221900--Sobic003G070600 Sobic001G221900--Sobic009G235700 Sobic001G221900--Sobic010G020600 Sobic010G078700 Sobic010G078700 Sobic001G221900--Sobic010G078700 Sobic001G221900--Sobic003G339600 Sobic001G221900--Sobic001G199400 Sobic001G221900--Sobic004G248100 Sobic001G074000 Sobic001G074000 Sobic001G221900--Sobic001G074000 Sobic003G113500 Sobic003G113500 Sobic001G221900--Sobic003G113500 Sobic006G125800 Sobic006G125800 Sobic009G235700--Sobic006G125800 Sobic009G235700--Sobic010G020600 Sobic009G235700--Sobic001G221900 Sobic009G235700--Sobic004G248100 Sobic009G235700--Sobic003G339600 Sobic001G522300 Sobic001G522300 Sobic009G235700--Sobic001G522300 Sobic009G235700--Sobic007G165800 Sobic004G283800 Sobic004G283800 Sobic009G235700--Sobic004G283800 Sobic003G360700 Sobic003G360700 Sobic009G235700--Sobic003G360700 Sobic009G129700 Sobic009G129700 Sobic001G298800--Sobic009G129700 Sobic005G104100 Sobic005G104100 Sobic001G298800--Sobic005G104100 Sobic005G156100 Sobic005G156100 Sobic001G298800--Sobic005G156100 Sobic001G298800--Sobic008G038200 Sobic001G298800--Sobic007G065300 Sobic001G298800--Sobic001G074000 Sobic001G298800--Sobic007G128100 Sobic001G298800--Sobic001G522300 Sobic006G093200 Sobic006G093200 Sobic001G298800--Sobic006G093200
Octagon: transcription factors


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