Gene annotation
Transcriptome id Sobic.003G361400.1
Synonym EMB2766
Functional annotation nsp1-like C-terminal region family protein, expressed
UniProt A0A1B6Q718
Pfam PF05064
Panther DB PTHR12084:SF0 PTHR12084
NCBI CDD KOG2196; Nuclear porin
KEGG Orthology K14306; NUP62, nuclear pore complex protein Nup62
Gene Ontology GO:0005643; nuclear pore GO:0017056structural constituent of nuclear pore


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g63780.1 : nsp1-like C-terminal region family protein, expressed
MaizeGDB (Corn) Zm00025a039600
Brachypodium KQK10646
Barley HORVU3Hr1G084740.1 , HORVU3Hr1G084740.6 , HORVU3Hr1G084740.7 , HORVU3Hr1G084740.4 , HORVU3Hr1G084740.5 , HORVU3Hr1G084740.8 , HORVU3Hr1G084740.9
Wheat TraesCS3B02G401100 , TraesCS3D02G362200 , TraesCS3D02G362200 , TraesCS3A02G369100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
2 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
3 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
4 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
5 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
6 Sobic.002G043000 HEN1, putative, expressed -
7 Sobic.001G033900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
9 Sobic.003G360300 exostosin family domain containing protein, expressed -
10 Sobic.004G111000 bromodomain containing protein, expressed -
11 Sobic.006G280100 SET domain containing protein, expressed -
12 Sobic.003G409200 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
13 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
14 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
15 Sobic.010G136250 - -
16 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
17 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
18 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
19 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
20 Sobic.002G430900 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic003G361400 Sobic003G361400 Sobic003G259600 Sobic003G259600 Sobic003G361400--Sobic003G259600 Sobic001G373000 Sobic001G373000 Sobic003G361400--Sobic001G373000 Sobic002G219900 Sobic002G219900 Sobic003G361400--Sobic002G219900 Sobic004G038100 Sobic004G038100 Sobic003G361400--Sobic004G038100 Sobic001G013300 Sobic001G013300 Sobic003G361400--Sobic001G013300 Sobic002G043000 Sobic002G043000 Sobic003G361400--Sobic002G043000 Sobic001G033900 Sobic001G033900 Sobic003G361400--Sobic001G033900 Sobic002G372500 Sobic002G372500 Sobic003G361400--Sobic002G372500 Sobic003G360300 Sobic003G360300 Sobic003G361400--Sobic003G360300 Sobic003G259600--Sobic003G361400 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic007G125700 Sobic007G125700 Sobic002G219900--Sobic007G125700 Sobic001G395200 Sobic001G395200 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic004G285000 Sobic004G285000 Sobic001G013300--Sobic004G285000 Sobic001G013300--Sobic001G373000 Sobic008G147200 Sobic008G147200 Sobic001G013300--Sobic008G147200 Sobic001G346900 Sobic001G346900 Sobic001G013300--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic001G013300--Sobic001G004100 Sobic010G215900 Sobic010G215900 Sobic001G013300--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic001G013300--Sobic003G409200 Sobic007G187600 Sobic007G187600 Sobic001G013300--Sobic007G187600 Sobic001G023800 Sobic001G023800 Sobic001G013300--Sobic001G023800 Sobic008G111600 Sobic008G111600 Sobic002G043000--Sobic008G111600 Sobic002G043000--Sobic004G215900 Sobic002G426100 Sobic002G426100 Sobic002G043000--Sobic002G426100 Sobic006G236000 Sobic006G236000 Sobic002G043000--Sobic006G236000 Sobic008G068100 Sobic008G068100 Sobic002G043000--Sobic008G068100 Sobic002G043000--Sobic006G181800 Sobic002G043000--Sobic004G038100 Sobic002G043000--Sobic006G280100 Sobic004G129500 Sobic004G129500 Sobic002G043000--Sobic004G129500 Sobic007G017200 Sobic007G017200 Sobic001G033900--Sobic007G017200 Sobic001G033900--Sobic003G259600 Sobic001G033900--Sobic001G013300 Sobic001G033900--Sobic003G361400 Sobic010G136250 Sobic010G136250 Sobic001G033900--Sobic010G136250 Sobic006G140400 Sobic006G140400 Sobic001G033900--Sobic006G140400 Sobic001G033900--Sobic003G360300 Sobic005G108000 Sobic005G108000 Sobic001G033900--Sobic005G108000 Sobic001G033900--Sobic001G334100 Sobic001G429600 Sobic001G429600 Sobic002G372500--Sobic001G429600 Sobic001G461300 Sobic001G461300 Sobic002G372500--Sobic001G461300 Sobic003G052800 Sobic003G052800 Sobic002G372500--Sobic003G052800 Sobic002G372500--Sobic001G373000 Sobic006G269800 Sobic006G269800 Sobic002G372500--Sobic006G269800 Sobic001G451300 Sobic001G451300 Sobic002G372500--Sobic001G451300 Sobic010G174700 Sobic010G174700 Sobic002G372500--Sobic010G174700 Sobic002G372500--Sobic008G147200 Sobic003G199300 Sobic003G199300 Sobic002G372500--Sobic003G199300 Sobic003G360300--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G360300--Sobic001G123600 Sobic003G360300--Sobic010G269300 Sobic007G047600 Sobic007G047600 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic003G360300--Sobic002G142700 Sobic004G342300 Sobic004G342300 Sobic003G360300--Sobic004G342300 Sobic004G277400 Sobic004G277400 Sobic003G360300--Sobic004G277400 Sobic008G080500 Sobic008G080500 Sobic003G360300--Sobic008G080500
Octagon: transcription factors


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