Gene annotation
Transcriptome id Sobic.002G132600.1
Synonym Sb02g011430, EMB3012
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
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UniProt A0A1B6QB27
Pfam PF02368
Panther DB PTHR23019 PTHR23019:SF0
NCBI CDD KOG1833; Nuclear pore complex, gp210 component
KEGG Orthology K14314; NUP210, nuclear pore complex protein Nup210
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40480 : embryo defective 3012
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a013502 , Zm00025a017617
Brachypodium KQJ91568
Barley HORVU5Hr1G092180.24 , HORVU5Hr1G092180.25 , HORVU5Hr1G092180.26 , HORVU5Hr1G092180.22 , HORVU5Hr1G092180.23 , HORVU5Hr1G092180.28 , HORVU5Hr1G092180.19 , HORVU5Hr1G092180.18 , HORVU5Hr1G092180.11 , HORVU5Hr1G092180.10 , HORVU5Hr1G092180.13 , HORVU5Hr1G092180.12 , HORVU5Hr1G092180.15 , HORVU5Hr1G092180.14 , HORVU5Hr1G092180.17 , HORVU5Hr1G092180.16 , HORVU5Hr1G092180.9 , HORVU5Hr1G092180.8 , HORVU5Hr1G092180.5 , HORVU5Hr1G092180.4 , HORVU5Hr1G092180.7 , HORVU5Hr1G092180.6 , HORVU5Hr1G092180.1 , HORVU5Hr1G092180.3 , HORVU5Hr1G092180.2 , HORVU5Hr1G092180.27 , HORVU5Hr1G092180.20 , HORVU5Hr1G092180.21
Wheat TraesCS5A02G370100 , TraesCS5B02G372400 , TraesCS5B02G372400 , TraesCS5D02G379600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G104900 - K03348: anaphase-promoting complex subunit 1
2 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
3 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
4 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
5 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
6 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
7 Sobic.006G059500 expressed protein K13150: COIL, coilin
8 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
9 Sobic.010G250800 DNA binding protein, putative, expressed -
10 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
11 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
12 Sobic.005G088900 AGAP007117-PA, putative, expressed -
13 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
14 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
15 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
16 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
17 Sobic.007G069700 gar2, putative, expressed K11294: NCL, nucleolin
18 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
20 Sobic.001G358800 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic002G132600 Sobic002G132600 Sobic009G104900 Sobic009G104900 Sobic002G132600--Sobic009G104900 Sobic003G432300 Sobic003G432300 Sobic002G132600--Sobic003G432300 Sobic005G028100 Sobic005G028100 Sobic002G132600--Sobic005G028100 Sobic001G373000 Sobic001G373000 Sobic002G132600--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic002G132600--Sobic002G126800 Sobic004G038100 Sobic004G038100 Sobic002G132600--Sobic004G038100 Sobic006G059500 Sobic006G059500 Sobic002G132600--Sobic006G059500 Sobic002G254800 Sobic002G254800 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic006G033101 Sobic006G033101 Sobic009G104900--Sobic006G033101 Sobic009G104900--Sobic001G373000 Sobic009G104900--Sobic002G132600 Sobic009G104900--Sobic002G126800 Sobic009G104900--Sobic004G038100 Sobic005G199200 Sobic005G199200 Sobic009G104900--Sobic005G199200 Sobic004G085000 Sobic004G085000 Sobic009G104900--Sobic004G085000 Sobic001G373800 Sobic001G373800 Sobic009G104900--Sobic001G373800 Sobic002G430300 Sobic002G430300 Sobic009G104900--Sobic002G430300 Sobic003G432300--Sobic002G126800 Sobic003G432300--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic003G432300--Sobic005G088900 Sobic003G432300--Sobic002G132600 Sobic003G432300--Sobic001G373000 Sobic003G144000 Sobic003G144000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic003G432300--Sobic004G038100 Sobic004G036700 Sobic004G036700 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic006G225400 Sobic006G225400 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic005G028100--Sobic002G126800 Sobic005G028100--Sobic001G373000 Sobic005G028100--Sobic002G132600 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic001G373000--Sobic005G028100 Sobic002G126800--Sobic003G432300 Sobic002G126800--Sobic005G028100 Sobic002G126800--Sobic001G373000 Sobic002G126800--Sobic009G104900 Sobic002G126800--Sobic002G132600 Sobic002G155100 Sobic002G155100 Sobic002G126800--Sobic002G155100 Sobic002G126800--Sobic006G033101 Sobic007G069700 Sobic007G069700 Sobic002G126800--Sobic007G069700 Sobic002G126800--Sobic005G088900 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic004G038100--Sobic010G188000 Sobic004G038100--Sobic003G259600 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic004G038100--Sobic009G104900 Sobic004G151000 Sobic004G151000 Sobic006G059500--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic006G059500--Sobic001G049800 Sobic006G059500--Sobic002G132600 Sobic006G111200 Sobic006G111200 Sobic006G059500--Sobic006G111200 Sobic006G059500--Sobic004G215900 Sobic007G060600 Sobic007G060600 Sobic006G059500--Sobic007G060600 Sobic006G140400 Sobic006G140400 Sobic006G059500--Sobic006G140400 Sobic001G453500 Sobic001G453500 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic003G161800 Sobic003G161800 Sobic002G254800--Sobic003G161800 Sobic002G254800--Sobic002G132600 Sobic002G254800--Sobic001G373000 Sobic010G236200 Sobic010G236200 Sobic002G254800--Sobic010G236200 Sobic002G254800--Sobic003G259600 Sobic002G254800--Sobic001G373800 Sobic002G254800--Sobic006G033101 Sobic002G254800--Sobic004G038100 Sobic009G032200 Sobic009G032200 Sobic002G254800--Sobic009G032200 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic001G408300 Sobic001G408300 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic010G250800--Sobic004G038100
Octagon: transcription factors


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