Gene annotation
Transcriptome id Sobic.006G032600.1
Synonym ATRMR1, RMR1
Functional annotation RING finger protein 13, putative, expressed
UniProt A0A1B6PJT1
Pfam PF13639 PF02225
Panther DB PTHR22765 PTHR22765:SF59
NCBI CDD KOG4628; Predicted E3 ubiquitin ligase
KEGG Orthology K15692; RNF13, E3 ubiquitin-protein ligase RNF13
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G66160 : receptor homology region transmembrane domain ring H2 motif protein 1
RAP-DB (Rice) LOC_Os03g07130.1 : RING finger protein 13, putative, expressed
MaizeGDB (Corn) Zm00025a055697
Brachypodium -
Barley HORVU2Hr1G011140.5 , HORVU2Hr1G011140.4 , HORVU2Hr1G011140.1
Wheat TraesCS2D02G062600 , TraesCS2A02G064300 , TraesCS2A02G064300 , TraesCSU02G014500 , TraesCSU02G014500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G032600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G208400 regulator protein, putative, expressed -
2 Sobic.004G030400 expressed protein -
3 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
4 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
5 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
6 Sobic.002G264300 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
7 Sobic.001G465500 radical SAM enzyme, putative, expressed -
8 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
9 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
10 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
11 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
12 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
13 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
14 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
15 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
16 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
17 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
18 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
19 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
20 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -


Gene co-expression network
sample Sobic006G032600 Sobic006G032600 Sobic002G208400 Sobic002G208400 Sobic006G032600--Sobic002G208400 Sobic004G030400 Sobic004G030400 Sobic006G032600--Sobic004G030400 Sobic003G274400 Sobic003G274400 Sobic006G032600--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G032600--Sobic001G115500 Sobic004G256300 Sobic004G256300 Sobic006G032600--Sobic004G256300 Sobic002G264300 Sobic002G264300 Sobic006G032600--Sobic002G264300 Sobic001G465500 Sobic001G465500 Sobic006G032600--Sobic001G465500 Sobic001G506000 Sobic001G506000 Sobic006G032600--Sobic001G506000 Sobic007G051400 Sobic007G051400 Sobic006G032600--Sobic007G051400 Sobic002G142700 Sobic002G142700 Sobic002G208400--Sobic002G142700 Sobic002G208400--Sobic001G115500 Sobic009G113100 Sobic009G113100 Sobic002G208400--Sobic009G113100 Sobic002G208400--Sobic006G032600 Sobic003G008600 Sobic003G008600 Sobic002G208400--Sobic003G008600 Sobic002G208400--Sobic004G030400 Sobic003G259600 Sobic003G259600 Sobic002G208400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic002G208400--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic002G208400--Sobic003G129300 Sobic002G160700 Sobic002G160700 Sobic004G030400--Sobic002G160700 Sobic004G356200 Sobic004G356200 Sobic004G030400--Sobic004G356200 Sobic001G200200 Sobic001G200200 Sobic004G030400--Sobic001G200200 Sobic002G199400 Sobic002G199400 Sobic004G030400--Sobic002G199400 Sobic004G030400--Sobic001G123600 Sobic004G030400--Sobic002G142700 Sobic004G030400--Sobic002G208400 Sobic003G388000 Sobic003G388000 Sobic004G030400--Sobic003G388000 Sobic002G386600 Sobic002G386600 Sobic004G030400--Sobic002G386600 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic006G245700 Sobic006G245700 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic007G125700 Sobic007G125700 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic002G017900 Sobic002G017900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic001G115500--Sobic002G208400 Sobic001G115500--Sobic002G264300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic004G256300--Sobic003G222700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic002G264300--Sobic001G115500 Sobic010G073500 Sobic010G073500 Sobic002G264300--Sobic010G073500 Sobic002G126800 Sobic002G126800 Sobic002G264300--Sobic002G126800 Sobic009G151800 Sobic009G151800 Sobic002G264300--Sobic009G151800 Sobic002G264300--Sobic001G373000 Sobic002G264300--Sobic001G008500 Sobic002G264300--Sobic004G030400 Sobic006G071628 Sobic006G071628 Sobic002G264300--Sobic006G071628 Sobic004G075200 Sobic004G075200 Sobic002G264300--Sobic004G075200 Sobic008G078000 Sobic008G078000 Sobic001G465500--Sobic008G078000 Sobic002G335500 Sobic002G335500 Sobic001G465500--Sobic002G335500 Sobic004G078500 Sobic004G078500 Sobic001G465500--Sobic004G078500 Sobic003G028400 Sobic003G028400 Sobic001G465500--Sobic003G028400 Sobic001G465500--Sobic002G208400 Sobic001G465500--Sobic004G030400 Sobic003G331000 Sobic003G331000 Sobic001G465500--Sobic003G331000 Sobic001G465500--Sobic003G129300 Sobic001G465500--Sobic001G436300 Sobic001G506000--Sobic001G487100 Sobic001G506000--Sobic004G075200 Sobic001G506000--Sobic001G115500 Sobic005G175000 Sobic005G175000 Sobic001G506000--Sobic005G175000 Sobic009G207200 Sobic009G207200 Sobic001G506000--Sobic009G207200 Sobic003G122000 Sobic003G122000 Sobic001G506000--Sobic003G122000 Sobic001G469200 Sobic001G469200 Sobic001G506000--Sobic001G469200 Sobic007G165300 Sobic007G165300 Sobic001G506000--Sobic007G165300 Sobic002G280900 Sobic002G280900 Sobic001G506000--Sobic002G280900 Sobic007G051400--Sobic002G142700 Sobic004G277400 Sobic004G277400 Sobic007G051400--Sobic004G277400 Sobic004G343200 Sobic004G343200 Sobic007G051400--Sobic004G343200 Sobic004G129500 Sobic004G129500 Sobic007G051400--Sobic004G129500 Sobic001G191900 Sobic001G191900 Sobic007G051400--Sobic001G191900 Sobic002G426100 Sobic002G426100 Sobic007G051400--Sobic002G426100 Sobic010G172400 Sobic010G172400 Sobic007G051400--Sobic010G172400 Sobic007G051400--Sobic004G256300 Sobic001G507200 Sobic001G507200 Sobic007G051400--Sobic001G507200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.