Gene annotation
Transcriptome id Sobic.006G217500.2,Sobic.006G217500.3
Synonym Sb06g028730
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt A0A1Z5RF03
Pfam PF02362
Panther DB PTHR31391 PTHR31391:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G19184 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os06g09420.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028565
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G148900 ankyrin, putative, expressed -
2 Sobic.001G456400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein of unknown function DUF1675 domain containing protein, expressed -
3 Sobic.002G335500 OsFBX255 - F-box domain containing protein, expressed -
4 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
6 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
7 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
8 Sobic.002G196500 linker histone H1 and H5 family protein, expressed -
9 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
10 Sobic.004G242200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nucleobase-ascorbate transporter, putative, expressed -
11 Sobic.003G188600 expressed protein -
12 Sobic.010G152000 powdery mildew resistant protein 5, putative, expressed -
13 Sobic.001G081800 GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
14 Sobic.002G238800 mago nashi, putative, expressed K12877: protein mago nashi
15 Sobic.010G212700 tetraspanin family protein, putative, expressed -
16 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
17 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
18 Sobic.001G171100 expressed protein -
19 Sobic.003G208800 aspartic proteinase, putative, expressed -
20 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51


Gene co-expression network
sample Sobic006G217500 Sobic006G217500 Sobic004G148900 Sobic004G148900 Sobic006G217500--Sobic004G148900 Sobic001G456400 Sobic001G456400 Sobic006G217500--Sobic001G456400 Sobic002G335500 Sobic002G335500 Sobic006G217500--Sobic002G335500 Sobic003G084200 Sobic003G084200 Sobic006G217500--Sobic003G084200 Sobic001G005800 Sobic001G005800 Sobic006G217500--Sobic001G005800 Sobic001G468000 Sobic001G468000 Sobic006G217500--Sobic001G468000 Sobic003G244000 Sobic003G244000 Sobic006G217500--Sobic003G244000 Sobic002G196500 Sobic002G196500 Sobic006G217500--Sobic002G196500 Sobic009G002200 Sobic009G002200 Sobic006G217500--Sobic009G002200 Sobic004G148900--Sobic006G217500 Sobic006G281900 Sobic006G281900 Sobic004G148900--Sobic006G281900 Sobic005G036200 Sobic005G036200 Sobic004G148900--Sobic005G036200 Sobic010G257000 Sobic010G257000 Sobic004G148900--Sobic010G257000 Sobic007G199800 Sobic007G199800 Sobic004G148900--Sobic007G199800 Sobic007G192200 Sobic007G192200 Sobic004G148900--Sobic007G192200 Sobic010G013500 Sobic010G013500 Sobic004G148900--Sobic010G013500 Sobic004G148900--Sobic001G456400 Sobic004G242200 Sobic004G242200 Sobic004G148900--Sobic004G242200 Sobic001G456400--Sobic004G242200 Sobic001G456400--Sobic005G036200 Sobic001G375800 Sobic001G375800 Sobic001G456400--Sobic001G375800 Sobic001G456400--Sobic009G002200 Sobic002G420400 Sobic002G420400 Sobic001G456400--Sobic002G420400 Sobic010G152000 Sobic010G152000 Sobic001G456400--Sobic010G152000 Sobic001G456400--Sobic003G084200 Sobic009G233000 Sobic009G233000 Sobic001G456400--Sobic009G233000 Sobic003G379900 Sobic003G379900 Sobic001G456400--Sobic003G379900 Sobic004G078500 Sobic004G078500 Sobic002G335500--Sobic004G078500 Sobic001G081800 Sobic001G081800 Sobic002G335500--Sobic001G081800 Sobic002G335500--Sobic002G196500 Sobic002G335500--Sobic001G005800 Sobic002G335500--Sobic009G002200 Sobic003G259300 Sobic003G259300 Sobic002G335500--Sobic003G259300 Sobic002G006100 Sobic002G006100 Sobic002G335500--Sobic002G006100 Sobic004G145300 Sobic004G145300 Sobic002G335500--Sobic004G145300 Sobic001G465500 Sobic001G465500 Sobic002G335500--Sobic001G465500 Sobic001G104500 Sobic001G104500 Sobic003G084200--Sobic001G104500 Sobic007G050800 Sobic007G050800 Sobic003G084200--Sobic007G050800 Sobic006G275500 Sobic006G275500 Sobic003G084200--Sobic006G275500 Sobic005G157300 Sobic005G157300 Sobic003G084200--Sobic005G157300 Sobic002G168000 Sobic002G168000 Sobic003G084200--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic003G084200--Sobic007G187700 Sobic003G084200--Sobic003G244000 Sobic003G084200--Sobic009G002200 Sobic003G084200--Sobic001G456400 Sobic002G253900 Sobic002G253900 Sobic001G005800--Sobic002G253900 Sobic008G045800 Sobic008G045800 Sobic001G005800--Sobic008G045800 Sobic002G056000 Sobic002G056000 Sobic001G005800--Sobic002G056000 Sobic001G005800--Sobic002G335500 Sobic009G148000 Sobic009G148000 Sobic001G005800--Sobic009G148000 Sobic006G200901 Sobic006G200901 Sobic001G005800--Sobic006G200901 Sobic006G106200 Sobic006G106200 Sobic001G005800--Sobic006G106200 Sobic004G014100 Sobic004G014100 Sobic001G005800--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic001G005800--Sobic002G343000 Sobic006G066400 Sobic006G066400 Sobic001G468000--Sobic006G066400 Sobic010G212700 Sobic010G212700 Sobic001G468000--Sobic010G212700 Sobic006G272800 Sobic006G272800 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic002G284100 Sobic002G284100 Sobic001G468000--Sobic002G284100 Sobic001G158300 Sobic001G158300 Sobic001G468000--Sobic001G158300 Sobic010G180200 Sobic010G180200 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G171100 Sobic001G171100 Sobic001G468000--Sobic001G171100 Sobic001G238900 Sobic001G238900 Sobic003G244000--Sobic001G238900 Sobic001G054700 Sobic001G054700 Sobic003G244000--Sobic001G054700 Sobic007G201900 Sobic007G201900 Sobic003G244000--Sobic007G201900 Sobic002G230800 Sobic002G230800 Sobic003G244000--Sobic002G230800 Sobic002G351100 Sobic002G351100 Sobic003G244000--Sobic002G351100 Sobic001G118800 Sobic001G118800 Sobic003G244000--Sobic001G118800 Sobic009G143200 Sobic009G143200 Sobic003G244000--Sobic009G143200 Sobic003G244000--Sobic005G157300 Sobic004G317000 Sobic004G317000 Sobic003G244000--Sobic004G317000 Sobic003G250100 Sobic003G250100 Sobic002G196500--Sobic003G250100 Sobic002G196500--Sobic001G468000 Sobic002G196500--Sobic006G272800 Sobic002G112000 Sobic002G112000 Sobic002G196500--Sobic002G112000 Sobic002G196500--Sobic002G335500 Sobic004G234600 Sobic004G234600 Sobic002G196500--Sobic004G234600 Sobic002G196500--Sobic007G201900 Sobic002G196500--Sobic001G171100 Sobic003G091200 Sobic003G091200 Sobic002G196500--Sobic003G091200 Sobic009G002200--Sobic007G050800 Sobic003G290400 Sobic003G290400 Sobic009G002200--Sobic003G290400 Sobic004G282601 Sobic004G282601 Sobic009G002200--Sobic004G282601 Sobic006G135800 Sobic006G135800 Sobic009G002200--Sobic006G135800 Sobic009G002200--Sobic005G036200 Sobic005G153000 Sobic005G153000 Sobic009G002200--Sobic005G153000 Sobic009G002200--Sobic001G375800 Sobic009G002200--Sobic004G078500 Sobic010G037901 Sobic010G037901 Sobic009G002200--Sobic010G037901
Octagon: transcription factors


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