Gene annotation
Transcriptome id Sobic.002G202000.1
Synonym Sb02g024705
Functional annotation double-stranded RNA binding motif containing protein, expressed
UniProt C5XCT9
Pfam PF14709
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00420 : Double-stranded RNA-binding domain (DsRBD)-containing protein
RAP-DB (Rice) LOC_Os09g24954.1 : double-stranded RNA binding motif containing protein, expressed
MaizeGDB (Corn) Zm00025a046985 , Zm00025a013910
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G202000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G002600 expressed protein -
2 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
3 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
4 Sobic.001G540800 DNA binding protein, putative, expressed -
5 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
6 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
7 Sobic.004G155600 dnaJ domain containing protein, expressed -
8 Sobic.001G518100 DNA-binding bromodomain-containing protein, putative, expressed K11723: bromodomain-containing protein 7
9 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
10 Sobic.007G183300 expressed protein -
11 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
12 Sobic.008G145800 nucleobase-ascorbate transporter, putative, expressed -
13 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
14 Sobic.006G271700 L-asparaginase precursor protein, putative, expressed K08657: taspase, threonine aspartase, 1
15 Sobic.010G051400 zinc finger protein, putative, expressed K04706: E3 SUMO-protein ligase PIAS1
16 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
17 Sobic.002G425500 ATPOT1, putative, expressed -
18 Sobic.008G132900 expressed protein -
19 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
20 Sobic.004G235300 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic002G202000 Sobic002G202000 Sobic001G002600 Sobic001G002600 Sobic002G202000--Sobic001G002600 Sobic004G107200 Sobic004G107200 Sobic002G202000--Sobic004G107200 Sobic001G501800 Sobic001G501800 Sobic002G202000--Sobic001G501800 Sobic001G540800 Sobic001G540800 Sobic002G202000--Sobic001G540800 Sobic010G237900 Sobic010G237900 Sobic002G202000--Sobic010G237900 Sobic006G269800 Sobic006G269800 Sobic002G202000--Sobic006G269800 Sobic004G155600 Sobic004G155600 Sobic002G202000--Sobic004G155600 Sobic001G518100 Sobic001G518100 Sobic002G202000--Sobic001G518100 Sobic001G153300 Sobic001G153300 Sobic002G202000--Sobic001G153300 Sobic001G002600--Sobic010G237900 Sobic004G129300 Sobic004G129300 Sobic001G002600--Sobic004G129300 Sobic010G145800 Sobic010G145800 Sobic001G002600--Sobic010G145800 Sobic001G002600--Sobic004G155600 Sobic006G118700 Sobic006G118700 Sobic001G002600--Sobic006G118700 Sobic007G191700 Sobic007G191700 Sobic001G002600--Sobic007G191700 Sobic006G096900 Sobic006G096900 Sobic001G002600--Sobic006G096900 Sobic006G014100 Sobic006G014100 Sobic001G002600--Sobic006G014100 Sobic003G133900 Sobic003G133900 Sobic001G002600--Sobic003G133900 Sobic002G431400 Sobic002G431400 Sobic004G107200--Sobic002G431400 Sobic002G425500 Sobic002G425500 Sobic004G107200--Sobic002G425500 Sobic006G119400 Sobic006G119400 Sobic004G107200--Sobic006G119400 Sobic003G101500 Sobic003G101500 Sobic004G107200--Sobic003G101500 Sobic002G043100 Sobic002G043100 Sobic004G107200--Sobic002G043100 Sobic004G107200--Sobic001G501800 Sobic001G456900 Sobic001G456900 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic004G107200--Sobic006G269800 Sobic001G501800--Sobic002G043100 Sobic001G501800--Sobic004G107200 Sobic005G200800 Sobic005G200800 Sobic001G501800--Sobic005G200800 Sobic001G501800--Sobic002G425500 Sobic003G409200 Sobic003G409200 Sobic001G501800--Sobic003G409200 Sobic001G063700 Sobic001G063700 Sobic001G501800--Sobic001G063700 Sobic001G501800--Sobic003G101500 Sobic003G360400 Sobic003G360400 Sobic001G501800--Sobic003G360400 Sobic001G346900 Sobic001G346900 Sobic001G501800--Sobic001G346900 Sobic006G036100 Sobic006G036100 Sobic001G540800--Sobic006G036100 Sobic001G540800--Sobic002G425500 Sobic002G145800 Sobic002G145800 Sobic001G540800--Sobic002G145800 Sobic001G540800--Sobic010G145800 Sobic004G019500 Sobic004G019500 Sobic001G540800--Sobic004G019500 Sobic001G227200 Sobic001G227200 Sobic001G540800--Sobic001G227200 Sobic001G540800--Sobic006G269800 Sobic001G020000 Sobic001G020000 Sobic001G540800--Sobic001G020000 Sobic002G309200 Sobic002G309200 Sobic001G540800--Sobic002G309200 Sobic010G237900--Sobic004G129300 Sobic010G237900--Sobic007G191700 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic010G237900--Sobic002G425500 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G237900--Sobic010G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic001G393900 Sobic001G393900 Sobic006G269800--Sobic001G393900 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic006G269800--Sobic004G107200 Sobic006G269800--Sobic002G425500 Sobic004G155600--Sobic006G014100 Sobic006G270600 Sobic006G270600 Sobic004G155600--Sobic006G270600 Sobic006G080400 Sobic006G080400 Sobic004G155600--Sobic006G080400 Sobic004G355800 Sobic004G355800 Sobic004G155600--Sobic004G355800 Sobic004G155600--Sobic002G425500 Sobic004G155600--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G155600--Sobic006G210000 Sobic004G155600--Sobic002G145800 Sobic004G155600--Sobic001G002600 Sobic003G398700 Sobic003G398700 Sobic001G518100--Sobic003G398700 Sobic009G256300 Sobic009G256300 Sobic001G518100--Sobic009G256300 Sobic004G209700 Sobic004G209700 Sobic001G518100--Sobic004G209700 Sobic003G168100 Sobic003G168100 Sobic001G518100--Sobic003G168100 Sobic001G518100--Sobic004G107200 Sobic003G241700 Sobic003G241700 Sobic001G518100--Sobic003G241700 Sobic005G064000 Sobic005G064000 Sobic001G518100--Sobic005G064000 Sobic008G113100 Sobic008G113100 Sobic001G518100--Sobic008G113100 Sobic008G033900 Sobic008G033900 Sobic001G518100--Sobic008G033900 Sobic008G038600 Sobic008G038600 Sobic001G153300--Sobic008G038600 Sobic001G153300--Sobic006G269800 Sobic010G204900 Sobic010G204900 Sobic001G153300--Sobic010G204900 Sobic002G155000 Sobic002G155000 Sobic001G153300--Sobic002G155000 Sobic007G030800 Sobic007G030800 Sobic001G153300--Sobic007G030800 Sobic001G025800 Sobic001G025800 Sobic001G153300--Sobic001G025800 Sobic004G344000 Sobic004G344000 Sobic001G153300--Sobic004G344000 Sobic006G258300 Sobic006G258300 Sobic001G153300--Sobic006G258300 Sobic002G109600 Sobic002G109600 Sobic001G153300--Sobic002G109600
Octagon: transcription factors


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