Gene annotation
Transcriptome id Sobic.004G243600.1
Synonym Sb04g028420
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A194YRH3
Pfam PF07728
Panther DB PTHR23073 PTHR23073:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G04180 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os02g50680.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039538 , Zm00025a021984
Brachypodium PNT69661 , KQK01995 , KQK01996
Barley -
Wheat TraesCS6B02G341600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
2 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
3 Sobic.010G057500 expressed protein K11138: telomere-associated protein RIF1
4 Sobic.006G019300 F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed K04508: transducin (beta)-like 1
5 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
6 Sobic.010G183300 - -
7 Sobic.004G344000 expressed protein -
8 Sobic.001G178300 DNA-binding protein, putative, expressed -
9 Sobic.002G105700 protein binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
10 Sobic.003G433200 BAS1, putative, expressed -
11 Sobic.001G340000 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
12 Sobic.002G344000 expressed protein -
13 Sobic.006G026250 - -
14 Sobic.007G223000 hypothetical protein -
15 Sobic.003G040200 expressed protein -
16 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
17 Sobic.007G018400 expressed protein -
18 Sobic.010G132600 selenoprotein O, putative, expressed -
19 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
20 Sobic.003G272700 transmembrane protein 16K, putative, expressed -


Gene co-expression network
sample Sobic004G243600 Sobic004G243600 Sobic002G374300 Sobic002G374300 Sobic004G243600--Sobic002G374300 Sobic008G054000 Sobic008G054000 Sobic004G243600--Sobic008G054000 Sobic010G057500 Sobic010G057500 Sobic004G243600--Sobic010G057500 Sobic006G019300 Sobic006G019300 Sobic004G243600--Sobic006G019300 Sobic008G002300 Sobic008G002300 Sobic004G243600--Sobic008G002300 Sobic010G183300 Sobic010G183300 Sobic004G243600--Sobic010G183300 Sobic004G344000 Sobic004G344000 Sobic004G243600--Sobic004G344000 Sobic001G178300 Sobic001G178300 Sobic004G243600--Sobic001G178300 Sobic002G105700 Sobic002G105700 Sobic004G243600--Sobic002G105700 Sobic003G363700 Sobic003G363700 Sobic002G374300--Sobic003G363700 Sobic003G043000 Sobic003G043000 Sobic002G374300--Sobic003G043000 Sobic001G542450 Sobic001G542450 Sobic002G374300--Sobic001G542450 Sobic003G012000 Sobic003G012000 Sobic002G374300--Sobic003G012000 Sobic002G154000 Sobic002G154000 Sobic002G374300--Sobic002G154000 Sobic001G151100 Sobic001G151100 Sobic002G374300--Sobic001G151100 Sobic004G209700 Sobic004G209700 Sobic002G374300--Sobic004G209700 Sobic001G393900 Sobic001G393900 Sobic002G374300--Sobic001G393900 Sobic002G371700 Sobic002G371700 Sobic002G374300--Sobic002G371700 Sobic004G244900 Sobic004G244900 Sobic008G054000--Sobic004G244900 Sobic004G356700 Sobic004G356700 Sobic008G054000--Sobic004G356700 Sobic004G334300 Sobic004G334300 Sobic008G054000--Sobic004G334300 Sobic002G257750 Sobic002G257750 Sobic008G054000--Sobic002G257750 Sobic008G044100 Sobic008G044100 Sobic008G054000--Sobic008G044100 Sobic003G398700 Sobic003G398700 Sobic008G054000--Sobic003G398700 Sobic003G101700 Sobic003G101700 Sobic008G054000--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic008G054000--Sobic002G316600 Sobic002G344000 Sobic002G344000 Sobic008G054000--Sobic002G344000 Sobic010G057500--Sobic004G243600 Sobic003G217200 Sobic003G217200 Sobic010G057500--Sobic003G217200 Sobic010G057500--Sobic008G002300 Sobic010G057500--Sobic002G105700 Sobic010G027900 Sobic010G027900 Sobic010G057500--Sobic010G027900 Sobic002G371600 Sobic002G371600 Sobic010G057500--Sobic002G371600 Sobic010G057500--Sobic002G374300 Sobic003G388000 Sobic003G388000 Sobic010G057500--Sobic003G388000 Sobic002G308700 Sobic002G308700 Sobic010G057500--Sobic002G308700 Sobic005G100700 Sobic005G100700 Sobic006G019300--Sobic005G100700 Sobic006G019300--Sobic002G374300 Sobic006G056700 Sobic006G056700 Sobic006G019300--Sobic006G056700 Sobic001G501800 Sobic001G501800 Sobic006G019300--Sobic001G501800 Sobic006G019300--Sobic004G243600 Sobic001G456300 Sobic001G456300 Sobic006G019300--Sobic001G456300 Sobic004G317300 Sobic004G317300 Sobic006G019300--Sobic004G317300 Sobic005G200800 Sobic005G200800 Sobic006G019300--Sobic005G200800 Sobic003G360400 Sobic003G360400 Sobic006G019300--Sobic003G360400 Sobic007G000200 Sobic007G000200 Sobic008G002300--Sobic007G000200 Sobic008G002300--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic008G002300--Sobic006G088200 Sobic008G002300--Sobic001G178300 Sobic006G032300 Sobic006G032300 Sobic008G002300--Sobic006G032300 Sobic002G029100 Sobic002G029100 Sobic008G002300--Sobic002G029100 Sobic002G256700 Sobic002G256700 Sobic008G002300--Sobic002G256700 Sobic002G245000 Sobic002G245000 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700 Sobic003G186900 Sobic003G186900 Sobic010G183300--Sobic003G186900 Sobic010G183300--Sobic002G257750 Sobic010G183300--Sobic004G244900 Sobic003G119600 Sobic003G119600 Sobic010G183300--Sobic003G119600 Sobic010G183300--Sobic008G054000 Sobic009G201300 Sobic009G201300 Sobic010G183300--Sobic009G201300 Sobic003G264800 Sobic003G264800 Sobic010G183300--Sobic003G264800 Sobic002G383800 Sobic002G383800 Sobic010G183300--Sobic002G383800 Sobic005G106600 Sobic005G106600 Sobic010G183300--Sobic005G106600 Sobic005G026000 Sobic005G026000 Sobic004G344000--Sobic005G026000 Sobic001G275300 Sobic001G275300 Sobic004G344000--Sobic001G275300 Sobic004G344000--Sobic010G183300 Sobic003G310300 Sobic003G310300 Sobic004G344000--Sobic003G310300 Sobic006G093300 Sobic006G093300 Sobic004G344000--Sobic006G093300 Sobic003G107500 Sobic003G107500 Sobic004G344000--Sobic003G107500 Sobic006G039400 Sobic006G039400 Sobic004G344000--Sobic006G039400 Sobic004G344000--Sobic001G178300 Sobic001G153300 Sobic001G153300 Sobic004G344000--Sobic001G153300 Sobic001G178300--Sobic002G256700 Sobic001G178300--Sobic008G002300 Sobic006G250300 Sobic006G250300 Sobic001G178300--Sobic006G250300 Sobic004G131800 Sobic004G131800 Sobic001G178300--Sobic004G131800 Sobic001G178300--Sobic001G493700 Sobic001G178300--Sobic006G088200 Sobic001G178300--Sobic001G275300 Sobic001G178300--Sobic006G056700 Sobic001G537500 Sobic001G537500 Sobic001G178300--Sobic001G537500 Sobic004G267900 Sobic004G267900 Sobic002G105700--Sobic004G267900 Sobic002G105700--Sobic004G243600 Sobic002G405200 Sobic002G405200 Sobic002G105700--Sobic002G405200 Sobic002G105700--Sobic010G057500 Sobic002G105700--Sobic002G374300 Sobic002G105700--Sobic010G027900 Sobic002G105700--Sobic006G019300 Sobic007G018400 Sobic007G018400 Sobic002G105700--Sobic007G018400 Sobic007G103500 Sobic007G103500 Sobic002G105700--Sobic007G103500
Octagon: transcription factors


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