Gene annotation
Transcriptome id Sobic.006G026250.1
Synonym -
Functional annotation -
UniProt A0A1Z5RBT4
Pfam PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G38180 : FAR1-related sequence 5
RAP-DB (Rice) LOC_Os02g18370.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
2 Sobic.001G340000 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
3 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
4 Sobic.003G296900 expressed protein -
5 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
6 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
7 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
8 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
9 Sobic.006G125500 expressed protein -
10 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
11 Sobic.003G043000 expressed protein -
12 Sobic.007G100500 PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
14 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
15 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
16 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
17 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
18 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
19 Sobic.004G351600 expressed protein K18734: protein SMG8
20 Sobic.002G399800 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic006G026250 Sobic006G026250 Sobic003G308500 Sobic003G308500 Sobic006G026250--Sobic003G308500 Sobic001G340000 Sobic001G340000 Sobic006G026250--Sobic001G340000 Sobic009G255700 Sobic009G255700 Sobic006G026250--Sobic009G255700 Sobic003G296900 Sobic003G296900 Sobic006G026250--Sobic003G296900 Sobic003G441900 Sobic003G441900 Sobic006G026250--Sobic003G441900 Sobic001G065100 Sobic001G065100 Sobic006G026250--Sobic001G065100 Sobic003G120300 Sobic003G120300 Sobic006G026250--Sobic003G120300 Sobic003G095900 Sobic003G095900 Sobic006G026250--Sobic003G095900 Sobic006G125500 Sobic006G125500 Sobic006G026250--Sobic006G125500 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic003G308500--Sobic006G125500 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic005G061900 Sobic005G061900 Sobic001G340000--Sobic005G061900 Sobic003G043000 Sobic003G043000 Sobic001G340000--Sobic003G043000 Sobic002G363800 Sobic002G363800 Sobic001G340000--Sobic002G363800 Sobic003G256800 Sobic003G256800 Sobic001G340000--Sobic003G256800 Sobic004G265500 Sobic004G265500 Sobic001G340000--Sobic004G265500 Sobic001G030000 Sobic001G030000 Sobic001G340000--Sobic001G030000 Sobic003G163200 Sobic003G163200 Sobic001G340000--Sobic003G163200 Sobic001G340000--Sobic006G026250 Sobic010G273300 Sobic010G273300 Sobic001G340000--Sobic010G273300 Sobic001G192000 Sobic001G192000 Sobic009G255700--Sobic001G192000 Sobic008G088872 Sobic008G088872 Sobic009G255700--Sobic008G088872 Sobic002G275700 Sobic002G275700 Sobic009G255700--Sobic002G275700 Sobic001G370900 Sobic001G370900 Sobic009G255700--Sobic001G370900 Sobic005G162500 Sobic005G162500 Sobic009G255700--Sobic005G162500 Sobic006G184900 Sobic006G184900 Sobic009G255700--Sobic006G184900 Sobic002G308700 Sobic002G308700 Sobic009G255700--Sobic002G308700 Sobic002G335600 Sobic002G335600 Sobic009G255700--Sobic002G335600 Sobic004G244900 Sobic004G244900 Sobic009G255700--Sobic004G244900 Sobic003G296900--Sobic003G043000 Sobic003G296900--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic003G296900--Sobic004G053500 Sobic003G296900--Sobic003G308500 Sobic003G296900--Sobic004G265500 Sobic003G241700 Sobic003G241700 Sobic003G296900--Sobic003G241700 Sobic001G255800 Sobic001G255800 Sobic003G296900--Sobic001G255800 Sobic010G000800 Sobic010G000800 Sobic003G296900--Sobic010G000800 Sobic004G131300 Sobic004G131300 Sobic003G296900--Sobic004G131300 Sobic005G167700 Sobic005G167700 Sobic003G441900--Sobic005G167700 Sobic001G433800 Sobic001G433800 Sobic003G441900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G441900--Sobic002G133300 Sobic010G123600 Sobic010G123600 Sobic003G441900--Sobic010G123600 Sobic001G151100 Sobic001G151100 Sobic003G441900--Sobic001G151100 Sobic004G276400 Sobic004G276400 Sobic003G441900--Sobic004G276400 Sobic001G020000 Sobic001G020000 Sobic003G441900--Sobic001G020000 Sobic004G334300 Sobic004G334300 Sobic003G441900--Sobic004G334300 Sobic001G194200 Sobic001G194200 Sobic003G441900--Sobic001G194200 Sobic002G042600 Sobic002G042600 Sobic001G065100--Sobic002G042600 Sobic002G179400 Sobic002G179400 Sobic001G065100--Sobic002G179400 Sobic001G263600 Sobic001G263600 Sobic001G065100--Sobic001G263600 Sobic002G401500 Sobic002G401500 Sobic001G065100--Sobic002G401500 Sobic001G493700 Sobic001G493700 Sobic001G065100--Sobic001G493700 Sobic001G065100--Sobic008G088872 Sobic004G322400 Sobic004G322400 Sobic001G065100--Sobic004G322400 Sobic005G062200 Sobic005G062200 Sobic001G065100--Sobic005G062200 Sobic001G065100--Sobic003G296900 Sobic002G424900 Sobic002G424900 Sobic003G120300--Sobic002G424900 Sobic009G129100 Sobic009G129100 Sobic003G120300--Sobic009G129100 Sobic006G216100 Sobic006G216100 Sobic003G120300--Sobic006G216100 Sobic001G455600 Sobic001G455600 Sobic003G120300--Sobic001G455600 Sobic010G034100 Sobic010G034100 Sobic003G120300--Sobic010G034100 Sobic009G107300 Sobic009G107300 Sobic003G120300--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic003G120300--Sobic007G017800 Sobic002G042800 Sobic002G042800 Sobic003G120300--Sobic002G042800 Sobic002G425500 Sobic002G425500 Sobic003G120300--Sobic002G425500 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic006G125500--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G125500--Sobic004G224600 Sobic006G125500--Sobic006G002800 Sobic006G125500--Sobic003G146600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic007G155500 Sobic007G155500 Sobic006G125500--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic006G125500--Sobic005G010900
Octagon: transcription factors


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