Gene annotation
Transcriptome id Sobic.002G165800.1,Sobic.002G165800.2
Synonym Sb02g020940
Functional annotation -
UniProt C5X934 , A0A1W0W4J2
Pfam PF00046 PF16719
Panther DB PTHR33827 PTHR33827:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G18380 : sequence-specific DNA binding transcription factors;sequence-specific DNA binding
RAP-DB (Rice) LOC_Os06g29020.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a046424 , Zm00025a013723
Brachypodium KQK18387 , KQK18386 , KQK18385 , KQK18389 , KQK18388 , KQK18384
Barley HORVU7Hr1G047760.5 , HORVU7Hr1G047760.4 , HORVU7Hr1G047760.1 , HORVU7Hr1G047760.3 , HORVU7Hr1G047760.2
Wheat TraesCS7B02G131100 , TraesCS7B02G131100 , TraesCS7D02G232800 , TraesCS7A02G232600 , TraesCS7A02G232600 , TraesCS7A02G232600 , TraesCS7A02G232600 , TraesCS7D02G232800 , TraesCS7D02G232800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G209700 FAR1 family protein, expressed -
2 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
3 Sobic.006G096900 expressed protein -
4 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
5 Sobic.010G226000 expressed protein -
6 Sobic.007G103600 protein of unknown function DUF1296 domain containing protein, expressed -
7 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
8 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
9 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
11 Sobic.001G426900 coronatine-insensitive protein, putative, expressed K13463: coronatine-insensitive protein 1
12 Sobic.008G115000 Fibronectin type III domain containing protein, expressed -
13 Sobic.003G444800 expressed protein -
14 Sobic.004G180900 PSP domain containing protein, expressed K13128: zinc finger CCHC domain-containing protein 8
15 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
16 Sobic.007G090430 - -
17 Sobic.003G212900 zinc ion binding protein, putative, expressed -
18 Sobic.003G051700 universal stress protein domain containing protein, putative, expressed -
19 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
20 Sobic.009G249700 expressed protein -


Gene co-expression network
sample Sobic002G165800 Sobic002G165800 Sobic004G209700 Sobic004G209700 Sobic002G165800--Sobic004G209700 Sobic005G207500 Sobic005G207500 Sobic002G165800--Sobic005G207500 Sobic006G096900 Sobic006G096900 Sobic002G165800--Sobic006G096900 Sobic010G077500 Sobic010G077500 Sobic002G165800--Sobic010G077500 Sobic010G226000 Sobic010G226000 Sobic002G165800--Sobic010G226000 Sobic007G103600 Sobic007G103600 Sobic002G165800--Sobic007G103600 Sobic009G228000 Sobic009G228000 Sobic002G165800--Sobic009G228000 Sobic006G056700 Sobic006G056700 Sobic002G165800--Sobic006G056700 Sobic009G092400 Sobic009G092400 Sobic002G165800--Sobic009G092400 Sobic001G433800 Sobic001G433800 Sobic004G209700--Sobic001G433800 Sobic003G360400 Sobic003G360400 Sobic004G209700--Sobic003G360400 Sobic004G209700--Sobic006G096900 Sobic002G154000 Sobic002G154000 Sobic004G209700--Sobic002G154000 Sobic004G209700--Sobic010G226000 Sobic003G241700 Sobic003G241700 Sobic004G209700--Sobic003G241700 Sobic009G044800 Sobic009G044800 Sobic004G209700--Sobic009G044800 Sobic004G209700--Sobic009G092400 Sobic002G083500 Sobic002G083500 Sobic004G209700--Sobic002G083500 Sobic003G059750 Sobic003G059750 Sobic005G207500--Sobic003G059750 Sobic002G153700 Sobic002G153700 Sobic005G207500--Sobic002G153700 Sobic005G207500--Sobic007G103600 Sobic003G119000 Sobic003G119000 Sobic005G207500--Sobic003G119000 Sobic008G009700 Sobic008G009700 Sobic005G207500--Sobic008G009700 Sobic002G353600 Sobic002G353600 Sobic005G207500--Sobic002G353600 Sobic010G069100 Sobic010G069100 Sobic005G207500--Sobic010G069100 Sobic002G071500 Sobic002G071500 Sobic005G207500--Sobic002G071500 Sobic001G026200 Sobic001G026200 Sobic005G207500--Sobic001G026200 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G096900--Sobic006G056700 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic006G096900--Sobic009G044800 Sobic001G042200 Sobic001G042200 Sobic010G077500--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic010G077500--Sobic006G049100 Sobic004G345400 Sobic004G345400 Sobic010G077500--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic008G058800 Sobic008G058800 Sobic010G077500--Sobic008G058800 Sobic007G056500 Sobic007G056500 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic001G451400 Sobic001G451400 Sobic010G226000--Sobic001G451400 Sobic009G256400 Sobic009G256400 Sobic010G226000--Sobic009G256400 Sobic010G226000--Sobic004G209700 Sobic009G165700 Sobic009G165700 Sobic010G226000--Sobic009G165700 Sobic003G166750 Sobic003G166750 Sobic010G226000--Sobic003G166750 Sobic001G441400 Sobic001G441400 Sobic010G226000--Sobic001G441400 Sobic001G457800 Sobic001G457800 Sobic010G226000--Sobic001G457800 Sobic001G111850 Sobic001G111850 Sobic010G226000--Sobic001G111850 Sobic003G444800 Sobic003G444800 Sobic010G226000--Sobic003G444800 Sobic007G103600--Sobic003G059750 Sobic007G103600--Sobic005G207500 Sobic005G118600 Sobic005G118600 Sobic007G103600--Sobic005G118600 Sobic007G103600--Sobic003G444800 Sobic007G103600--Sobic002G071500 Sobic008G153000 Sobic008G153000 Sobic007G103600--Sobic008G153000 Sobic007G103600--Sobic003G119000 Sobic002G264200 Sobic002G264200 Sobic007G103600--Sobic002G264200 Sobic006G032500 Sobic006G032500 Sobic007G103600--Sobic006G032500 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic006G056700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic007G218000 Sobic007G218000 Sobic009G092400--Sobic007G218000 Sobic005G160400 Sobic005G160400 Sobic009G092400--Sobic005G160400 Sobic009G092400--Sobic009G044800 Sobic009G249700 Sobic009G249700 Sobic009G092400--Sobic009G249700 Sobic007G125000 Sobic007G125000 Sobic009G092400--Sobic007G125000 Sobic009G092400--Sobic004G209700 Sobic002G303600 Sobic002G303600 Sobic009G092400--Sobic002G303600 Sobic006G180000 Sobic006G180000 Sobic009G092400--Sobic006G180000 Sobic007G132100 Sobic007G132100 Sobic009G092400--Sobic007G132100
Octagon: transcription factors


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