Gene annotation
Transcriptome id Sobic.001G254600.1
Synonym Sb01g022490
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized oxidoreductase, putative, expressed
UniProt C5WM99
Pfam PF01408
Panther DB PTHR22604 PTHR22604:SF132
NCBI CDD KOG2741; Dimeric dihydrodiol dehydrogenase
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G09670 : Oxidoreductase family protein
RAP-DB (Rice) LOC_Os10g26400.1 : uncharacterized oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a007016
Brachypodium -
Barley HORVU3Hr1G036150.6 , HORVU3Hr1G036150.4 , HORVU3Hr1G036150.5 , HORVU3Hr1G036150.2 , HORVU3Hr1G036150.3 , HORVU3Hr1G036150.1 , HORVU3Hr1G036150.8 , HORVU1Hr1G085660.1 , HORVU1Hr1G085660.2 , HORVU1Hr1G085660.3 , HORVU1Hr1G085660.4
Wheat TraesCS3A02G177400 , TraesCS3D02G183400 , TraesCS1A02G388800 , TraesCS1D02G396800 , TraesCS3B02G207600 , TraesCS1A02G389200 , TraesCS1B02G417000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G030100 acetyl-CoA carboxylase, putative, expressed K11262: acetyl-CoA carboxylase / biotin carboxylase 1
2 Sobic.006G261700 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
3 Sobic.003G222500 phosphoglucomutase, putative, expressed K01835: phosphoglucomutase
4 Sobic.003G418200 spermatogenesis-associated protein 20 precursor, putative, expressed -
5 Sobic.006G132000 glycine-rich protein, putative, expressed -
6 Sobic.001G333500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
7 Sobic.004G343900 expressed protein -
8 Sobic.004G331700 aspartate aminotransferase 5(PubMedID : 26465154)@-(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K00811: aspartate aminotransferase, chloroplastic
9 Sobic.008G171300 methyltransferase domain containing protein, putative, expressed K12502: VTE3, MPBQ/MSBQ methyltransferase
10 Sobic.009G140300 MLO domain containing protein, putative, expressed K08472: mlo protein
11 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
12 Sobic.003G151500 CRS2-associated factor 2, chloroplast precursor, putative, expressed -
13 Sobic.002G233700 -(PubMedID : 26976818)@dicarboxylate transporter 2(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family
14 Sobic.009G059300 haloacid dehalogenase-like hydrolase family protein, putative, expressed -
15 Sobic.007G100500 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -
17 Sobic.001G500100 dehydrogenase, putative, expressed -
18 Sobic.007G225500 expressed protein -
19 Sobic.007G052400 rubredoxin family protein, putative, expressed -
20 Sobic.004G012900 expressed protein -


Gene co-expression network
sample Sobic001G254600 Sobic001G254600 Sobic006G030100 Sobic006G030100 Sobic001G254600--Sobic006G030100 Sobic006G261700 Sobic006G261700 Sobic001G254600--Sobic006G261700 Sobic003G222500 Sobic003G222500 Sobic001G254600--Sobic003G222500 Sobic003G418200 Sobic003G418200 Sobic001G254600--Sobic003G418200 Sobic006G132000 Sobic006G132000 Sobic001G254600--Sobic006G132000 Sobic001G333500 Sobic001G333500 Sobic001G254600--Sobic001G333500 Sobic004G343900 Sobic004G343900 Sobic001G254600--Sobic004G343900 Sobic004G331700 Sobic004G331700 Sobic001G254600--Sobic004G331700 Sobic008G171300 Sobic008G171300 Sobic001G254600--Sobic008G171300 Sobic006G030100--Sobic001G254600 Sobic003G155300 Sobic003G155300 Sobic006G030100--Sobic003G155300 Sobic006G050000 Sobic006G050000 Sobic006G030100--Sobic006G050000 Sobic009G063100 Sobic009G063100 Sobic006G030100--Sobic009G063100 Sobic009G129100 Sobic009G129100 Sobic006G030100--Sobic009G129100 Sobic006G030100--Sobic003G418200 Sobic006G030100--Sobic003G222500 Sobic004G016400 Sobic004G016400 Sobic006G030100--Sobic004G016400 Sobic007G070000 Sobic007G070000 Sobic006G030100--Sobic007G070000 Sobic002G279700 Sobic002G279700 Sobic006G261700--Sobic002G279700 Sobic009G140300 Sobic009G140300 Sobic006G261700--Sobic009G140300 Sobic006G261700--Sobic008G171300 Sobic001G020100 Sobic001G020100 Sobic006G261700--Sobic001G020100 Sobic004G307400 Sobic004G307400 Sobic006G261700--Sobic004G307400 SobicK031800 SobicK031800 Sobic006G261700--SobicK031800 Sobic006G261700--Sobic004G343900 Sobic008G188600 Sobic008G188600 Sobic006G261700--Sobic008G188600 Sobic006G261700--Sobic001G254600 Sobic004G175500 Sobic004G175500 Sobic003G222500--Sobic004G175500 Sobic003G387800 Sobic003G387800 Sobic003G222500--Sobic003G387800 Sobic002G198600 Sobic002G198600 Sobic003G222500--Sobic002G198600 Sobic002G065200 Sobic002G065200 Sobic003G222500--Sobic002G065200 Sobic004G183100 Sobic004G183100 Sobic003G222500--Sobic004G183100 Sobic002G288300 Sobic002G288300 Sobic003G222500--Sobic002G288300 Sobic009G030900 Sobic009G030900 Sobic003G222500--Sobic009G030900 Sobic010G005500 Sobic010G005500 Sobic003G222500--Sobic010G005500 Sobic004G012900 Sobic004G012900 Sobic003G222500--Sobic004G012900 Sobic003G418200--Sobic001G254600 Sobic003G418200--Sobic006G030100 Sobic007G100500 Sobic007G100500 Sobic003G418200--Sobic007G100500 Sobic003G404000 Sobic003G404000 Sobic003G418200--Sobic003G404000 Sobic001G290600 Sobic001G290600 Sobic003G418200--Sobic001G290600 Sobic010G155600 Sobic010G155600 Sobic003G418200--Sobic010G155600 Sobic003G433300 Sobic003G433300 Sobic003G418200--Sobic003G433300 Sobic001G283300 Sobic001G283300 Sobic003G418200--Sobic001G283300 Sobic002G366300 Sobic002G366300 Sobic003G418200--Sobic002G366300 Sobic002G401800 Sobic002G401800 Sobic006G132000--Sobic002G401800 Sobic003G432500 Sobic003G432500 Sobic006G132000--Sobic003G432500 Sobic004G336200 Sobic004G336200 Sobic006G132000--Sobic004G336200 Sobic002G272100 Sobic002G272100 Sobic006G132000--Sobic002G272100 Sobic005G110400 Sobic005G110400 Sobic006G132000--Sobic005G110400 Sobic006G106400 Sobic006G106400 Sobic006G132000--Sobic006G106400 Sobic006G132000--Sobic004G012900 Sobic003G287900 Sobic003G287900 Sobic006G132000--Sobic003G287900 Sobic008G073100 Sobic008G073100 Sobic006G132000--Sobic008G073100 Sobic004G337400 Sobic004G337400 Sobic001G333500--Sobic004G337400 Sobic002G193800 Sobic002G193800 Sobic001G333500--Sobic002G193800 Sobic003G219200 Sobic003G219200 Sobic001G333500--Sobic003G219200 Sobic004G069000 Sobic004G069000 Sobic001G333500--Sobic004G069000 Sobic005G199400 Sobic005G199400 Sobic001G333500--Sobic005G199400 Sobic001G194300 Sobic001G194300 Sobic001G333500--Sobic001G194300 Sobic006G102000 Sobic006G102000 Sobic001G333500--Sobic006G102000 Sobic001G333500--SobicK031800 Sobic004G238200 Sobic004G238200 Sobic001G333500--Sobic004G238200 Sobic004G343900--Sobic004G307400 Sobic004G343900--Sobic008G171300 Sobic003G387100 Sobic003G387100 Sobic004G343900--Sobic003G387100 Sobic004G343900--Sobic008G188600 Sobic005G149400 Sobic005G149400 Sobic004G343900--Sobic005G149400 Sobic004G343900--Sobic009G030900 Sobic009G059300 Sobic009G059300 Sobic004G343900--Sobic009G059300 Sobic004G274100 Sobic004G274100 Sobic004G343900--Sobic004G274100 Sobic006G067400 Sobic006G067400 Sobic004G343900--Sobic006G067400 Sobic001G102800 Sobic001G102800 Sobic004G331700--Sobic001G102800 Sobic006G207800 Sobic006G207800 Sobic004G331700--Sobic006G207800 Sobic001G309300 Sobic001G309300 Sobic004G331700--Sobic001G309300 Sobic009G237100 Sobic009G237100 Sobic004G331700--Sobic009G237100 Sobic007G052400 Sobic007G052400 Sobic004G331700--Sobic007G052400 Sobic007G009200 Sobic007G009200 Sobic004G331700--Sobic007G009200 Sobic004G331700--Sobic010G005500 Sobic004G331700--Sobic003G387100 Sobic004G331700--Sobic009G059300 Sobic002G233700 Sobic002G233700 Sobic008G171300--Sobic002G233700 Sobic008G171300--Sobic007G052400 Sobic007G225500 Sobic007G225500 Sobic008G171300--Sobic007G225500 Sobic003G002300 Sobic003G002300 Sobic008G171300--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic008G171300--Sobic008G102000 Sobic008G171300--Sobic009G059300 Sobic008G171300--Sobic004G012900 Sobic009G140600 Sobic009G140600 Sobic008G171300--Sobic009G140600 Sobic009G183700 Sobic009G183700 Sobic008G171300--Sobic009G183700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.