Gene annotation
Transcriptome id Sobic.001G283300.2
Synonym Sb01g027870
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1B6QLP1
Pfam PF13041 PF01535 PF13812
Panther DB PTHR24015:SF466 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16830 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g42760.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a003546
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G132200 DNA-repair protein complementing XP-C cells, putative, expressed K10838: xeroderma pigmentosum group C-complementing protein
2 Sobic.006G125500 expressed protein -
3 Sobic.007G075800 GTPase of unknown function domain containing protein, putative, expressed -
4 Sobic.002G155000 EMB1381, putative, expressed -
5 Sobic.006G128400 PPR repeat containing protein, expressed -
6 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
7 Sobic.002G317100 PPR repeat containing protein, expressed -
8 Sobic.010G260000 pentatricopeptide, putative, expressed -
9 Sobic.003G399100 pentatricopeptide, putative, expressed -
10 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
11 Sobic.003G433300 DNA mismatch repair protein Mlh1, putative, expressed K08734: DNA mismatch repair protein MLH1
12 Sobic.007G201700 mTERF domain containing protein, expressed -
13 Sobic.006G249500 expressed protein K16914: RIOX1, bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66
14 Sobic.010G115400 pentatricopeptide, putative, expressed -
15 Sobic.003G309050 - -
16 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
17 Sobic.001G393900 FAD binding domain containing protein, expressed -
18 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
19 Sobic.008G038600 pyridoxal-dependent decarboxylase protein, putative, expressed K01586: diaminopimelate decarboxylase
20 Sobic.001G290600 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase


Gene co-expression network
sample Sobic001G283300 Sobic001G283300 Sobic007G132200 Sobic007G132200 Sobic001G283300--Sobic007G132200 Sobic006G125500 Sobic006G125500 Sobic001G283300--Sobic006G125500 Sobic007G075800 Sobic007G075800 Sobic001G283300--Sobic007G075800 Sobic002G155000 Sobic002G155000 Sobic001G283300--Sobic002G155000 Sobic006G128400 Sobic006G128400 Sobic001G283300--Sobic006G128400 Sobic002G043100 Sobic002G043100 Sobic001G283300--Sobic002G043100 Sobic002G317100 Sobic002G317100 Sobic001G283300--Sobic002G317100 Sobic010G260000 Sobic010G260000 Sobic001G283300--Sobic010G260000 Sobic003G399100 Sobic003G399100 Sobic001G283300--Sobic003G399100 Sobic008G038600 Sobic008G038600 Sobic007G132200--Sobic008G038600 Sobic007G132200--Sobic002G155000 Sobic001G290600 Sobic001G290600 Sobic007G132200--Sobic001G290600 Sobic007G132200--Sobic001G283300 Sobic007G132200--Sobic010G260000 Sobic001G025800 Sobic001G025800 Sobic007G132200--Sobic001G025800 Sobic007G132200--Sobic003G399100 Sobic010G204900 Sobic010G204900 Sobic007G132200--Sobic010G204900 Sobic006G049900 Sobic006G049900 Sobic007G132200--Sobic006G049900 Sobic003G308500 Sobic003G308500 Sobic006G125500--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G125500--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic006G125500--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic006G125500--Sobic003G146600 Sobic002G371600 Sobic002G371600 Sobic006G125500--Sobic002G371600 Sobic010G080700 Sobic010G080700 Sobic006G125500--Sobic010G080700 Sobic004G332400 Sobic004G332400 Sobic006G125500--Sobic004G332400 Sobic007G155500 Sobic007G155500 Sobic006G125500--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic006G125500--Sobic005G010900 Sobic002G031700 Sobic002G031700 Sobic007G075800--Sobic002G031700 Sobic007G075800--Sobic002G155000 Sobic004G025800 Sobic004G025800 Sobic007G075800--Sobic004G025800 Sobic004G030800 Sobic004G030800 Sobic007G075800--Sobic004G030800 Sobic008G165900 Sobic008G165900 Sobic007G075800--Sobic008G165900 Sobic007G075800--Sobic006G128400 Sobic008G051200 Sobic008G051200 Sobic007G075800--Sobic008G051200 Sobic007G075800--Sobic006G049900 Sobic002G318800 Sobic002G318800 Sobic007G075800--Sobic002G318800 Sobic002G155000--Sobic007G075800 Sobic002G155000--Sobic002G031700 Sobic002G155000--Sobic006G128400 Sobic002G155000--Sobic002G317100 Sobic003G134000 Sobic003G134000 Sobic002G155000--Sobic003G134000 Sobic001G153300 Sobic001G153300 Sobic002G155000--Sobic001G153300 Sobic002G155000--Sobic007G132200 Sobic001G393900 Sobic001G393900 Sobic002G155000--Sobic001G393900 Sobic006G269800 Sobic006G269800 Sobic002G155000--Sobic006G269800 Sobic002G378100 Sobic002G378100 Sobic006G128400--Sobic002G378100 Sobic001G501400 Sobic001G501400 Sobic006G128400--Sobic001G501400 Sobic002G092050 Sobic002G092050 Sobic006G128400--Sobic002G092050 Sobic001G224200 Sobic001G224200 Sobic006G128400--Sobic001G224200 Sobic006G128400--Sobic008G165900 Sobic006G128400--Sobic007G075800 Sobic010G051700 Sobic010G051700 Sobic006G128400--Sobic010G051700 Sobic010G224700 Sobic010G224700 Sobic006G128400--Sobic010G224700 Sobic006G128400--Sobic002G317100 Sobic004G107200 Sobic004G107200 Sobic002G043100--Sobic004G107200 Sobic001G451300 Sobic001G451300 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G399800 Sobic002G399800 Sobic002G043100--Sobic002G399800 Sobic010G262100 Sobic010G262100 Sobic002G043100--Sobic010G262100 Sobic002G043100--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic002G043100--Sobic003G309050 Sobic002G425500 Sobic002G425500 Sobic002G043100--Sobic002G425500 Sobic002G043100--Sobic001G393900 Sobic002G317100--Sobic008G038600 Sobic002G317100--Sobic006G128400 Sobic002G317100--Sobic001G393900 Sobic002G317100--Sobic002G155000 Sobic002G317100--Sobic003G308500 Sobic010G115400 Sobic010G115400 Sobic002G317100--Sobic010G115400 Sobic006G193300 Sobic006G193300 Sobic002G317100--Sobic006G193300 Sobic002G317100--Sobic006G269800 Sobic001G178300 Sobic001G178300 Sobic002G317100--Sobic001G178300 Sobic003G033100 Sobic003G033100 Sobic010G260000--Sobic003G033100 Sobic010G260000--Sobic007G132200 Sobic010G260000--Sobic010G051700 Sobic010G260000--Sobic004G025800 Sobic001G172700 Sobic001G172700 Sobic010G260000--Sobic001G172700 Sobic009G185700 Sobic009G185700 Sobic010G260000--Sobic009G185700 Sobic003G101700 Sobic003G101700 Sobic010G260000--Sobic003G101700 Sobic006G137600 Sobic006G137600 Sobic010G260000--Sobic006G137600 Sobic010G260000--Sobic002G399800 Sobic003G399100--Sobic008G038600 Sobic004G354000 Sobic004G354000 Sobic003G399100--Sobic004G354000 Sobic009G005400 Sobic009G005400 Sobic003G399100--Sobic009G005400 Sobic002G305100 Sobic002G305100 Sobic003G399100--Sobic002G305100 Sobic003G399100--Sobic007G132200 Sobic003G267500 Sobic003G267500 Sobic003G399100--Sobic003G267500 Sobic003G399100--Sobic006G128400 Sobic008G017100 Sobic008G017100 Sobic003G399100--Sobic008G017100 Sobic003G399100--Sobic010G224700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.