Gene annotation
Transcriptome id Sobic.006G249500.1
Synonym Sb06g031470
Functional annotation expressed protein
UniProt C5Y9K4
Pfam PF08007
Panther DB PTHR13096 PTHR13096:SF5
NCBI CDD -
KEGG Orthology K16914; RIOX1, bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g56405.1 : expressed protein
MaizeGDB (Corn) Zm00025a014476 , Zm00025a057261
Brachypodium -
Barley -
Wheat TraesCS2B02G528200 , TraesCS2D02G500500 , TraesCS2D02G500500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G115400 pentatricopeptide, putative, expressed -
2 Sobic.008G147200 tubulin, putative, expressed -
3 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
4 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
5 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.003G052800 RST1, putative, expressed -
7 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
8 Sobic.003G413100 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
9 Sobic.007G030800 expressed protein -
10 Sobic.010G174700 expressed protein -
11 Sobic.001G393900 FAD binding domain containing protein, expressed -
12 Sobic.006G261400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
13 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
14 Sobic.002G048700 BT1 family protein, putative, expressed -
15 Sobic.004G019500 pentatricopeptide, putative, expressed -
16 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
17 Sobic.001G153300 cytosolic 5-nucleotidase III, putative, expressed K01081: 5'-nucleotidase
18 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
19 Sobic.004G019200 DNA-directed RNA polymerase I subunit RPA2, putative, expressed K03002: RPA2, DNA-directed RNA polymerase I subunit RPA2
20 Sobic.002G145800 flowering time control protein FCA, putative, expressed -


Gene co-expression network
sample Sobic006G249500 Sobic006G249500 Sobic010G115400 Sobic010G115400 Sobic006G249500--Sobic010G115400 Sobic008G147200 Sobic008G147200 Sobic006G249500--Sobic008G147200 Sobic003G308500 Sobic003G308500 Sobic006G249500--Sobic003G308500 Sobic006G269800 Sobic006G269800 Sobic006G249500--Sobic006G269800 Sobic001G089600 Sobic001G089600 Sobic006G249500--Sobic001G089600 Sobic003G052800 Sobic003G052800 Sobic006G249500--Sobic003G052800 Sobic010G096000 Sobic010G096000 Sobic006G249500--Sobic010G096000 Sobic003G413100 Sobic003G413100 Sobic006G249500--Sobic003G413100 Sobic007G030800 Sobic007G030800 Sobic006G249500--Sobic007G030800 Sobic010G115400--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic010G115400--Sobic002G399800 Sobic010G102600 Sobic010G102600 Sobic010G115400--Sobic010G102600 Sobic010G174700 Sobic010G174700 Sobic010G115400--Sobic010G174700 Sobic001G393900 Sobic001G393900 Sobic010G115400--Sobic001G393900 Sobic003G095900 Sobic003G095900 Sobic010G115400--Sobic003G095900 Sobic004G019200 Sobic004G019200 Sobic010G115400--Sobic004G019200 Sobic003G260400 Sobic003G260400 Sobic010G115400--Sobic003G260400 Sobic003G032700 Sobic003G032700 Sobic010G115400--Sobic003G032700 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic010G007100 Sobic010G007100 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800 Sobic003G146600 Sobic003G146600 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic006G002800 Sobic006G002800 Sobic003G308500--Sobic006G002800 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic001G145400 Sobic001G145400 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic006G269800--Sobic002G145800 Sobic006G269800--Sobic003G052800 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic006G269800--Sobic001G393900 Sobic002G043100 Sobic002G043100 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic004G107200 Sobic004G107200 Sobic006G269800--Sobic004G107200 Sobic002G425500 Sobic002G425500 Sobic006G269800--Sobic002G425500 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic001G089600--Sobic010G115400 Sobic001G493700 Sobic001G493700 Sobic001G089600--Sobic001G493700 Sobic002G397500 Sobic002G397500 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic003G052800--Sobic006G269800 Sobic003G052800--Sobic002G145800 Sobic002G430300 Sobic002G430300 Sobic003G052800--Sobic002G430300 Sobic003G052800--Sobic002G371600 Sobic002G372500 Sobic002G372500 Sobic003G052800--Sobic002G372500 Sobic001G051700 Sobic001G051700 Sobic003G052800--Sobic001G051700 Sobic003G052800--Sobic002G043100 Sobic003G052800--Sobic010G174700 Sobic003G217200 Sobic003G217200 Sobic003G052800--Sobic003G217200 Sobic001G246500 Sobic001G246500 Sobic010G096000--Sobic001G246500 Sobic008G100100 Sobic008G100100 Sobic010G096000--Sobic008G100100 Sobic004G086200 Sobic004G086200 Sobic010G096000--Sobic004G086200 Sobic001G306900 Sobic001G306900 Sobic010G096000--Sobic001G306900 Sobic010G096000--Sobic001G346900 Sobic008G173100 Sobic008G173100 Sobic010G096000--Sobic008G173100 Sobic003G416700 Sobic003G416700 Sobic010G096000--Sobic003G416700 Sobic001G155400 Sobic001G155400 Sobic010G096000--Sobic001G155400 Sobic010G096000--Sobic008G147200 Sobic003G413100--Sobic001G155400 Sobic007G016900 Sobic007G016900 Sobic003G413100--Sobic007G016900 Sobic003G413100--Sobic010G096000 Sobic001G373400 Sobic001G373400 Sobic003G413100--Sobic001G373400 Sobic002G292800 Sobic002G292800 Sobic003G413100--Sobic002G292800 Sobic003G413100--Sobic006G245900 Sobic004G345400 Sobic004G345400 Sobic003G413100--Sobic004G345400 Sobic009G040800 Sobic009G040800 Sobic003G413100--Sobic009G040800 Sobic001G042200 Sobic001G042200 Sobic003G413100--Sobic001G042200 Sobic001G153300 Sobic001G153300 Sobic007G030800--Sobic001G153300 Sobic007G030800--Sobic006G269800 Sobic002G155000 Sobic002G155000 Sobic007G030800--Sobic002G155000 Sobic002G317100 Sobic002G317100 Sobic007G030800--Sobic002G317100 Sobic007G211800 Sobic007G211800 Sobic007G030800--Sobic007G211800 Sobic008G038600 Sobic008G038600 Sobic007G030800--Sobic008G038600 Sobic007G030800--Sobic001G417500 Sobic007G030800--Sobic006G249500 Sobic004G351800 Sobic004G351800 Sobic007G030800--Sobic004G351800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.