Gene annotation
Transcriptome id Sobic.003G033100.1
Synonym Sb03g003010
Functional annotation RNA methyltransferase protein, putative, expressed
UniProt C5XLX5
Pfam PF05958
Panther DB PTHR11061 PTHR11061:SF30
NCBI CDD KOG2187; tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
KEGG Orthology -
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0006396RNA processing


Orthologs (automatic annotation)
TAIR AT3G21300 : RNA methyltransferase family protein
RAP-DB (Rice) LOC_Os01g09750.2 : RNA methyltransferase protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK03143
Barley HORVU3Hr1G019340.21 , HORVU3Hr1G019340.20 , HORVU3Hr1G019340.8 , HORVU3Hr1G019340.9 , HORVU3Hr1G019340.1 , HORVU3Hr1G019340.2 , HORVU3Hr1G019340.3 , HORVU3Hr1G019340.4 , HORVU3Hr1G019340.5 , HORVU3Hr1G019340.6 , HORVU3Hr1G019340.7 , HORVU3Hr1G019340.12 , HORVU3Hr1G019340.13 , HORVU3Hr1G019340.10 , HORVU3Hr1G019340.11 , HORVU3Hr1G019340.16 , HORVU3Hr1G019340.17 , HORVU3Hr1G019340.14 , HORVU3Hr1G019340.15 , HORVU3Hr1G019340.18 , HORVU3Hr1G019340.19
Wheat TraesCS3A02G105900 , TraesCS3D02G108100 , TraesCS3B02G124400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
2 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
3 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
4 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
5 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
7 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
8 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
9 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
10 Sobic.003G083400 cytoskeletal protein, putative, expressed -
11 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
12 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
13 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
14 Sobic.004G134200 GTP binding protein, putative, expressed -
15 Sobic.003G352500 ribonuclease protein, putative, expressed -
16 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
17 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
18 Sobic.003G077700 DUF647 domain containing protein, putative, expressed -
19 Sobic.002G411400 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
20 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH


Gene co-expression network
sample Sobic003G033100 Sobic003G033100 Sobic002G043600 Sobic002G043600 Sobic003G033100--Sobic002G043600 Sobic005G084500 Sobic005G084500 Sobic003G033100--Sobic005G084500 Sobic004G025800 Sobic004G025800 Sobic003G033100--Sobic004G025800 Sobic010G051700 Sobic010G051700 Sobic003G033100--Sobic010G051700 Sobic002G181000 Sobic002G181000 Sobic003G033100--Sobic002G181000 Sobic007G005400 Sobic007G005400 Sobic003G033100--Sobic007G005400 Sobic003G234900 Sobic003G234900 Sobic003G033100--Sobic003G234900 Sobic005G142800 Sobic005G142800 Sobic003G033100--Sobic005G142800 Sobic006G049900 Sobic006G049900 Sobic003G033100--Sobic006G049900 Sobic003G232700 Sobic003G232700 Sobic002G043600--Sobic003G232700 Sobic002G043600--Sobic002G181000 Sobic001G516901 Sobic001G516901 Sobic002G043600--Sobic001G516901 Sobic003G352500 Sobic003G352500 Sobic002G043600--Sobic003G352500 Sobic004G163800 Sobic004G163800 Sobic002G043600--Sobic004G163800 Sobic001G495200 Sobic001G495200 Sobic002G043600--Sobic001G495200 Sobic004G011300 Sobic004G011300 Sobic002G043600--Sobic004G011300 Sobic005G002900 Sobic005G002900 Sobic002G043600--Sobic005G002900 Sobic005G231100 Sobic005G231100 Sobic002G043600--Sobic005G231100 Sobic005G084500--Sobic007G005400 Sobic002G118200 Sobic002G118200 Sobic005G084500--Sobic002G118200 Sobic004G238200 Sobic004G238200 Sobic005G084500--Sobic004G238200 Sobic004G337400 Sobic004G337400 Sobic005G084500--Sobic004G337400 Sobic006G219600 Sobic006G219600 Sobic005G084500--Sobic006G219600 Sobic004G019800 Sobic004G019800 Sobic005G084500--Sobic004G019800 Sobic005G084500--Sobic004G163800 Sobic001G530900 Sobic001G530900 Sobic005G084500--Sobic001G530900 Sobic005G084500--Sobic001G516901 Sobic003G391400 Sobic003G391400 Sobic004G025800--Sobic003G391400 Sobic007G075800 Sobic007G075800 Sobic004G025800--Sobic007G075800 Sobic004G025800--Sobic003G033100 Sobic004G030800 Sobic004G030800 Sobic004G025800--Sobic004G030800 Sobic004G025800--Sobic010G051700 Sobic001G172700 Sobic001G172700 Sobic004G025800--Sobic001G172700 Sobic003G101700 Sobic003G101700 Sobic004G025800--Sobic003G101700 Sobic002G418600 Sobic002G418600 Sobic004G025800--Sobic002G418600 Sobic004G025800--Sobic005G142800 Sobic010G051700--Sobic003G033100 Sobic010G051700--Sobic004G025800 Sobic006G128400 Sobic006G128400 Sobic010G051700--Sobic006G128400 Sobic003G434700 Sobic003G434700 Sobic010G051700--Sobic003G434700 Sobic010G115400 Sobic010G115400 Sobic010G051700--Sobic010G115400 Sobic010G051700--Sobic001G172700 Sobic003G032700 Sobic003G032700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic004G019200 Sobic004G019200 Sobic010G051700--Sobic004G019200 Sobic002G181000--Sobic003G232700 Sobic001G500600 Sobic001G500600 Sobic002G181000--Sobic001G500600 Sobic002G181000--Sobic002G043600 Sobic004G333400 Sobic004G333400 Sobic002G181000--Sobic004G333400 Sobic001G054100 Sobic001G054100 Sobic002G181000--Sobic001G054100 Sobic008G039600 Sobic008G039600 Sobic002G181000--Sobic008G039600 Sobic002G181000--Sobic001G495200 Sobic002G181000--Sobic003G352500 Sobic009G148500 Sobic009G148500 Sobic002G181000--Sobic009G148500 Sobic003G085100 Sobic003G085100 Sobic007G005400--Sobic003G085100 Sobic007G005400--Sobic002G118200 Sobic007G005400--Sobic005G084500 Sobic007G005400--Sobic004G238200 Sobic003G150800 Sobic003G150800 Sobic007G005400--Sobic003G150800 Sobic003G287900 Sobic003G287900 Sobic007G005400--Sobic003G287900 Sobic007G005400--Sobic005G231100 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic003G234900--Sobic004G163800 Sobic003G234900--Sobic007G185700 Sobic003G067100 Sobic003G067100 Sobic003G234900--Sobic003G067100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic003G234900--Sobic002G043600 Sobic003G141100 Sobic003G141100 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic001G298900 Sobic001G298900 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic004G134200 Sobic004G134200 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic002G399800 Sobic002G399800 Sobic006G049900--Sobic002G399800 Sobic006G049900--Sobic010G079500 Sobic002G316600 Sobic002G316600 Sobic006G049900--Sobic002G316600 Sobic003G260400 Sobic003G260400 Sobic006G049900--Sobic003G260400 Sobic006G049900--Sobic006G119400 Sobic004G276400 Sobic004G276400 Sobic006G049900--Sobic004G276400 Sobic005G122700 Sobic005G122700 Sobic006G049900--Sobic005G122700 Sobic003G441900 Sobic003G441900 Sobic006G049900--Sobic003G441900 Sobic001G004400 Sobic001G004400 Sobic006G049900--Sobic001G004400
Octagon: transcription factors


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