Gene annotation
Transcriptome id Sobic.002G411400.6,Sobic.002G411400.1,Sobic.002G411400.2,Sobic.002G411400.3,Sobic.002G411400.4,Sobic.002G411400.5
Synonym Sb02g042420, PDE318
Functional annotation nucleolar GTP-binding protein 1, putative, expressed
UniProt A0A1W0W7T4 , A0A1W0W7Y6 , A0A1W0W7S9 , A0A1W0W7S0
Pfam PF06858
Panther DB PTHR11702 PTHR11702:SF28
NCBI CDD -
KEGG Orthology K06943; nucleolar GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G80770 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os08g06230.1 : nucleolar GTP-binding protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a055122
Brachypodium KQJ95314
Barley HORVU6Hr1G010490.1 , HORVU6Hr1G010490.4 , HORVU6Hr1G010490.2
Wheat TraesCS6D02G055600 , TraesCS6A02G053900 , TraesCS6B02G072400 , TraesCS6B02G072400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G083400 cytoskeletal protein, putative, expressed -
2 Sobic.005G231100 alpha-hemolysin, putative, expressed K08998: uncharacterized protein
3 Sobic.003G150800 preprotein translocase subunit secA, chloroplast precursor, putative, expressed K03070: preprotein translocase subunit SecA
4 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
5 Sobic.003G085100 MYB family transcription factor, putative, expressed -
6 Sobic.008G130900 ribosomal protein S6, putative, expressed -
7 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
8 Sobic.003G141100 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
9 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
10 Sobic.004G359100 expressed protein -
11 Sobic.009G223200 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
12 Sobic.003G033100 RNA methyltransferase protein, putative, expressed -
13 Sobic.002G424700 ATPOT1, putative, expressed -
14 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
15 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
16 Sobic.005G204200 peptide chain release factor protein, putative, expressed K02835: prfA, MTRF1, peptide chain release factor 1
17 Sobic.006G088000 translocon Tic40, putative, expressed -
18 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
19 Sobic.003G352500 ribonuclease protein, putative, expressed -
20 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase


Gene co-expression network
sample Sobic002G411400 Sobic002G411400 Sobic003G083400 Sobic003G083400 Sobic002G411400--Sobic003G083400 Sobic005G231100 Sobic005G231100 Sobic002G411400--Sobic005G231100 Sobic003G150800 Sobic003G150800 Sobic002G411400--Sobic003G150800 Sobic005G072100 Sobic005G072100 Sobic002G411400--Sobic005G072100 Sobic003G085100 Sobic003G085100 Sobic002G411400--Sobic003G085100 Sobic008G130900 Sobic008G130900 Sobic002G411400--Sobic008G130900 Sobic007G005400 Sobic007G005400 Sobic002G411400--Sobic007G005400 Sobic003G141100 Sobic003G141100 Sobic002G411400--Sobic003G141100 Sobic004G011300 Sobic004G011300 Sobic002G411400--Sobic004G011300 Sobic004G359100 Sobic004G359100 Sobic003G083400--Sobic004G359100 Sobic003G083400--Sobic002G411400 Sobic003G128400 Sobic003G128400 Sobic003G083400--Sobic003G128400 Sobic001G375000 Sobic001G375000 Sobic003G083400--Sobic001G375000 Sobic004G238900 Sobic004G238900 Sobic003G083400--Sobic004G238900 Sobic006G088000 Sobic006G088000 Sobic003G083400--Sobic006G088000 Sobic003G083400--Sobic004G011300 Sobic004G336000 Sobic004G336000 Sobic003G083400--Sobic004G336000 Sobic003G083400--Sobic008G130900 Sobic001G500600 Sobic001G500600 Sobic005G231100--Sobic001G500600 Sobic005G231100--Sobic003G085100 Sobic009G148500 Sobic009G148500 Sobic005G231100--Sobic009G148500 Sobic001G516901 Sobic001G516901 Sobic005G231100--Sobic001G516901 Sobic003G232700 Sobic003G232700 Sobic005G231100--Sobic003G232700 Sobic004G238200 Sobic004G238200 Sobic005G231100--Sobic004G238200 Sobic005G231100--Sobic007G005400 Sobic002G043600 Sobic002G043600 Sobic005G231100--Sobic002G043600 Sobic003G234900 Sobic003G234900 Sobic005G231100--Sobic003G234900 Sobic003G150800--Sobic003G085100 Sobic002G042500 Sobic002G042500 Sobic003G150800--Sobic002G042500 Sobic005G111550 Sobic005G111550 Sobic003G150800--Sobic005G111550 Sobic003G150800--Sobic007G005400 Sobic001G037500 Sobic001G037500 Sobic003G150800--Sobic001G037500 Sobic005G063000 Sobic005G063000 Sobic003G150800--Sobic005G063000 Sobic002G314400 Sobic002G314400 Sobic003G150800--Sobic002G314400 Sobic004G328400 Sobic004G328400 Sobic003G150800--Sobic004G328400 Sobic003G150800--Sobic003G141100 Sobic003G434700 Sobic003G434700 Sobic005G072100--Sobic003G434700 Sobic003G067100 Sobic003G067100 Sobic005G072100--Sobic003G067100 Sobic009G129100 Sobic009G129100 Sobic005G072100--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic005G072100--Sobic003G168100 Sobic002G127550 Sobic002G127550 Sobic005G072100--Sobic002G127550 Sobic002G316600 Sobic002G316600 Sobic005G072100--Sobic002G316600 Sobic001G145000 Sobic001G145000 Sobic005G072100--Sobic001G145000 Sobic005G072100--Sobic003G234900 Sobic004G244900 Sobic004G244900 Sobic005G072100--Sobic004G244900 Sobic003G085100--Sobic003G150800 Sobic003G085100--Sobic007G005400 Sobic003G085100--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic003G085100--Sobic003G160800 Sobic003G085100--Sobic005G063000 Sobic003G233700 Sobic003G233700 Sobic003G085100--Sobic003G233700 Sobic001G001300 Sobic001G001300 Sobic003G085100--Sobic001G001300 Sobic003G287900 Sobic003G287900 Sobic003G085100--Sobic003G287900 Sobic008G001900 Sobic008G001900 Sobic003G085100--Sobic008G001900 Sobic008G130900--Sobic001G375000 Sobic006G055800 Sobic006G055800 Sobic008G130900--Sobic006G055800 Sobic008G130900--Sobic003G128400 Sobic005G002900 Sobic005G002900 Sobic008G130900--Sobic005G002900 Sobic009G131600 Sobic009G131600 Sobic008G130900--Sobic009G131600 Sobic003G432500 Sobic003G432500 Sobic008G130900--Sobic003G432500 Sobic002G181000 Sobic002G181000 Sobic008G130900--Sobic002G181000 Sobic001G083100 Sobic001G083100 Sobic008G130900--Sobic001G083100 Sobic002G131700 Sobic002G131700 Sobic008G130900--Sobic002G131700 Sobic007G005400--Sobic003G085100 Sobic002G118200 Sobic002G118200 Sobic007G005400--Sobic002G118200 Sobic005G084500 Sobic005G084500 Sobic007G005400--Sobic005G084500 Sobic007G005400--Sobic004G238200 Sobic007G005400--Sobic003G150800 Sobic007G005400--Sobic003G287900 Sobic007G005400--Sobic005G231100 Sobic004G337400 Sobic004G337400 Sobic007G005400--Sobic004G337400 Sobic007G185700 Sobic007G185700 Sobic007G005400--Sobic007G185700 Sobic003G141100--Sobic001G500600 Sobic003G141100--Sobic004G328400 Sobic004G336200 Sobic004G336200 Sobic003G141100--Sobic004G336200 Sobic003G141100--Sobic003G232700 Sobic003G372900 Sobic003G372900 Sobic003G141100--Sobic003G372900 Sobic001G054100 Sobic001G054100 Sobic003G141100--Sobic001G054100 Sobic003G141100--Sobic009G148500 Sobic003G141100--Sobic003G160800 Sobic003G141100--Sobic005G002900 Sobic006G106400 Sobic006G106400 Sobic004G011300--Sobic006G106400 Sobic004G011300--Sobic009G148500 Sobic001G495200 Sobic001G495200 Sobic004G011300--Sobic001G495200 Sobic004G011300--Sobic004G336000 Sobic004G011300--Sobic002G181000 Sobic004G011300--Sobic002G043600 Sobic008G039600 Sobic008G039600 Sobic004G011300--Sobic008G039600 Sobic008G073100 Sobic008G073100 Sobic004G011300--Sobic008G073100 Sobic003G301300 Sobic003G301300 Sobic004G011300--Sobic003G301300
Octagon: transcription factors


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