Gene annotation
Transcriptome id Sobic.001G172700.2
Synonym Sb01g015050
Functional annotation PPR repeat containing protein, expressed
UniProt C5WT88
Pfam PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF688
NCBI CDD -
KEGG Orthology K17964; leucine-rich PPR motif-containing protein, mitochondrial
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55840 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g40690.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a007206
Brachypodium -
Barley HORVU4Hr1G012780.18 , HORVU4Hr1G012780.19 , HORVU4Hr1G012780.14 , HORVU4Hr1G012780.15 , HORVU4Hr1G012780.16 , HORVU4Hr1G012780.17 , HORVU4Hr1G012780.10 , HORVU4Hr1G012780.11 , HORVU4Hr1G012780.12 , HORVU4Hr1G012780.13 , HORVU4Hr1G012780.21 , HORVU4Hr1G012780.20 , HORVU4Hr1G012780.23 , HORVU4Hr1G012780.22 , HORVU4Hr1G012780.25 , HORVU4Hr1G012780.24 , HORVU4Hr1G012780.27 , HORVU4Hr1G012780.26 , HORVU4Hr1G012780.29 , HORVU4Hr1G012780.28 , HORVU4Hr1G012780.36 , HORVU4Hr1G012780.37 , HORVU4Hr1G012780.34 , HORVU4Hr1G012780.35 , HORVU4Hr1G012780.32 , HORVU4Hr1G012780.33 , HORVU4Hr1G012780.30 , HORVU4Hr1G012780.31 , HORVU4Hr1G012780.38 , HORVU4Hr1G012780.39 , HORVU4Hr1G012780.7 , HORVU4Hr1G012780.4 , HORVU4Hr1G012780.5 , HORVU4Hr1G012780.2 , HORVU4Hr1G012780.3 , HORVU4Hr1G012780.1 , HORVU4Hr1G012780.9 , HORVU4Hr1G012780.6 , HORVU4Hr1G012780.8 , HORVU4Hr1G012780.43 , HORVU4Hr1G012780.42 , HORVU4Hr1G012780.41 , HORVU4Hr1G012780.40 , HORVU4Hr1G012780.47 , HORVU4Hr1G012780.46 , HORVU4Hr1G012780.45 , HORVU4Hr1G012780.49 , HORVU4Hr1G012780.48 , HORVU4Hr1G012780.50 , HORVU4Hr1G012780.51 , HORVU4Hr1G012780.52 , HORVU4Hr1G012780.53 , HORVU4Hr1G012780.56 , HORVU4Hr1G012780.57 , HORVU4Hr1G012780.58 , HORVU4Hr1G012780.59 , HORVU4Hr1G012780.61 , HORVU4Hr1G012780.60 , HORVU4Hr1G012780.63 , HORVU4Hr1G012780.62
Wheat TraesCS4D02G075200 , TraesCS4A02G238200 , TraesCS4A02G238200 , TraesCS4B02G076700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G134200 GTP binding protein, putative, expressed -
2 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
3 Sobic.004G025800 phosphoribosyl transferase, putative, expressed K00948: PRPS, ribose-phosphate pyrophosphokinase
4 Sobic.006G137600 AT hook motif family protein, expressed -
5 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
6 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
7 Sobic.008G044100 expressed protein -
8 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
9 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
10 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
11 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
12 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
13 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
14 Sobic.006G031800 - -
15 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
16 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
17 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
18 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
19 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
20 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -


Gene co-expression network
sample Sobic001G172700 Sobic001G172700 Sobic004G134200 Sobic004G134200 Sobic001G172700--Sobic004G134200 Sobic009G215500 Sobic009G215500 Sobic001G172700--Sobic009G215500 Sobic004G025800 Sobic004G025800 Sobic001G172700--Sobic004G025800 Sobic006G137600 Sobic006G137600 Sobic001G172700--Sobic006G137600 Sobic003G434700 Sobic003G434700 Sobic001G172700--Sobic003G434700 Sobic010G053600 Sobic010G053600 Sobic001G172700--Sobic010G053600 Sobic008G044100 Sobic008G044100 Sobic001G172700--Sobic008G044100 Sobic005G142800 Sobic005G142800 Sobic001G172700--Sobic005G142800 Sobic010G051700 Sobic010G051700 Sobic001G172700--Sobic010G051700 Sobic004G134200--Sobic008G044100 Sobic001G374100 Sobic001G374100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic004G134200--Sobic010G010700 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic004G134200--Sobic001G172700 Sobic001G530900 Sobic001G530900 Sobic009G215500--Sobic001G530900 Sobic009G215500--Sobic008G044100 Sobic009G215500--Sobic004G134200 Sobic003G155100 Sobic003G155100 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic006G219600 Sobic006G219600 Sobic009G215500--Sobic006G219600 Sobic001G133000 Sobic001G133000 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700 Sobic003G391400 Sobic003G391400 Sobic004G025800--Sobic003G391400 Sobic007G075800 Sobic007G075800 Sobic004G025800--Sobic007G075800 Sobic003G033100 Sobic003G033100 Sobic004G025800--Sobic003G033100 Sobic004G030800 Sobic004G030800 Sobic004G025800--Sobic004G030800 Sobic004G025800--Sobic010G051700 Sobic004G025800--Sobic001G172700 Sobic003G101700 Sobic003G101700 Sobic004G025800--Sobic003G101700 Sobic002G418600 Sobic002G418600 Sobic004G025800--Sobic002G418600 Sobic004G025800--Sobic005G142800 Sobic006G137600--Sobic010G053600 Sobic001G020000 Sobic001G020000 Sobic006G137600--Sobic001G020000 Sobic001G352900 Sobic001G352900 Sobic006G137600--Sobic001G352900 Sobic009G142000 Sobic009G142000 Sobic006G137600--Sobic009G142000 Sobic006G137600--Sobic001G172700 Sobic007G171100 Sobic007G171100 Sobic006G137600--Sobic007G171100 Sobic001G451300 Sobic001G451300 Sobic006G137600--Sobic001G451300 Sobic002G412700 Sobic002G412700 Sobic006G137600--Sobic002G412700 Sobic002G043100 Sobic002G043100 Sobic006G137600--Sobic002G043100 Sobic001G022500 Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G067100 Sobic003G067100 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic004G225600 Sobic004G225600 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic009G109200 Sobic009G109200 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic001G298900 Sobic001G298900 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic010G051700--Sobic003G033100 Sobic010G051700--Sobic004G025800 Sobic006G128400 Sobic006G128400 Sobic010G051700--Sobic006G128400 Sobic010G051700--Sobic003G434700 Sobic010G115400 Sobic010G115400 Sobic010G051700--Sobic010G115400 Sobic010G051700--Sobic001G172700 Sobic003G032700 Sobic003G032700 Sobic010G051700--Sobic003G032700 Sobic003G171500 Sobic003G171500 Sobic010G051700--Sobic003G171500 Sobic004G019200 Sobic004G019200 Sobic010G051700--Sobic004G019200
Octagon: transcription factors


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