Gene annotation
Transcriptome id Sobic.010G176300.1
Synonym ATHD1, HDA19, HD1, Sb10g022820, RPD3A, HDA1, ATHDA19
Functional annotation histone deacetylase 19, putative, expressed
UniProt A0A194YJW7
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF127
NCBI CDD -
KEGG Orthology K06067; histone deacetylase 1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38130 : histone deacetylase 1
RAP-DB (Rice) LOC_Os06g38470.1 : histone deacetylase 19, putative, expressed
MaizeGDB (Corn) Zm00025a020206 , Zm00025a051169 , Zm00025a034574
Brachypodium PNT75718 , KQK17869 , KQK17870 , KQJ94026 , KQJ96306 , KQJ96307
Barley HORVU7Hr1G085870.9 , HORVU7Hr1G085870.8 , HORVU7Hr1G085870.7 , HORVU7Hr1G085870.6 , HORVU7Hr1G085870.5 , HORVU7Hr1G085870.4 , HORVU7Hr1G085870.3 , HORVU7Hr1G085870.2 , HORVU7Hr1G085870.1 , HORVU6Hr1G038010.4 , HORVU6Hr1G038010.5 , HORVU6Hr1G038010.7 , HORVU6Hr1G038010.1 , HORVU6Hr1G038010.2 , HORVU6Hr1G038010.3 , HORVU6Hr1G038010.8 , HORVU6Hr1G038710.6 , HORVU6Hr1G038010.6 , HORVU7Hr1G085870.10 , HORVU6Hr1G038710.5 , HORVU6Hr1G038710.4 , HORVU6Hr1G038710.3 , HORVU6Hr1G038710.2 , HORVU6Hr1G038710.1
Wheat TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7A02G365600 , TraesCS7D02G356800 , TraesCS6B02G212600 , TraesCS6B02G212600 , TraesCS6B02G212600 , TraesCS6B02G212600 , TraesCS6D02G168400 , TraesCS6D02G168400 , TraesCS6B02G212600 , TraesCS6D02G171000 , TraesCS7B02G261800 , TraesCS6D02G171000 , TraesCS6D02G171000 , TraesCS6D02G171000 , TraesCS6A02G181100 , TraesCS6A02G184100 , TraesCS6A02G184100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
2 Sobic.003G212100 expressed protein -
3 Sobic.001G276200 ACI13, putative, expressed -
4 Sobic.002G428800 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
5 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
6 Sobic.006G089400 cleft lip and palate transmembrane protein 1, putative, expressed -
7 Sobic.001G070700 expressed protein -
8 Sobic.004G318000 expressed protein -
9 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
10 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
11 Sobic.002G242200 expressed protein -
12 Sobic.003G314400 purple acid phosphatase precursor, putative, expressed -
13 Sobic.003G444600 TGD2, putative, expressed -
14 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
15 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
16 Sobic.007G097400 sin-like protein conserved region containing protein, expressed K14721: RPC5, DNA-directed RNA polymerase III subunit RPC5
17 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
18 Sobic.002G167500 expressed protein -
19 Sobic.002G031700 - -
20 Sobic.009G239200 - -


Gene co-expression network
sample Sobic010G176300 Sobic010G176300 Sobic001G501300 Sobic001G501300 Sobic010G176300--Sobic001G501300 Sobic003G212100 Sobic003G212100 Sobic010G176300--Sobic003G212100 Sobic001G276200 Sobic001G276200 Sobic010G176300--Sobic001G276200 Sobic002G428800 Sobic002G428800 Sobic010G176300--Sobic002G428800 Sobic003G134000 Sobic003G134000 Sobic010G176300--Sobic003G134000 Sobic006G089400 Sobic006G089400 Sobic010G176300--Sobic006G089400 Sobic001G070700 Sobic001G070700 Sobic010G176300--Sobic001G070700 Sobic004G318000 Sobic004G318000 Sobic010G176300--Sobic004G318000 Sobic010G100800 Sobic010G100800 Sobic010G176300--Sobic010G100800 Sobic001G501300--Sobic010G100800 Sobic001G207200 Sobic001G207200 Sobic001G501300--Sobic001G207200 Sobic004G262700 Sobic004G262700 Sobic001G501300--Sobic004G262700 Sobic001G501300--Sobic010G176300 Sobic008G165900 Sobic008G165900 Sobic001G501300--Sobic008G165900 Sobic002G167500 Sobic002G167500 Sobic001G501300--Sobic002G167500 Sobic005G026000 Sobic005G026000 Sobic001G501300--Sobic005G026000 Sobic003G193200 Sobic003G193200 Sobic001G501300--Sobic003G193200 Sobic002G031700 Sobic002G031700 Sobic001G501300--Sobic002G031700 Sobic004G130400 Sobic004G130400 Sobic003G212100--Sobic004G130400 Sobic003G212100--Sobic010G176300 Sobic003G314400 Sobic003G314400 Sobic003G212100--Sobic003G314400 Sobic001G188900 Sobic001G188900 Sobic003G212100--Sobic001G188900 Sobic009G174000 Sobic009G174000 Sobic003G212100--Sobic009G174000 Sobic009G162100 Sobic009G162100 Sobic003G212100--Sobic009G162100 Sobic007G028500 Sobic007G028500 Sobic003G212100--Sobic007G028500 Sobic001G261432 Sobic001G261432 Sobic003G212100--Sobic001G261432 Sobic003G362500 Sobic003G362500 Sobic003G212100--Sobic003G362500 Sobic006G077200 Sobic006G077200 Sobic001G276200--Sobic006G077200 Sobic001G449900 Sobic001G449900 Sobic001G276200--Sobic001G449900 Sobic001G493200 Sobic001G493200 Sobic001G276200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic001G276200--Sobic003G249600 Sobic004G096400 Sobic004G096400 Sobic001G276200--Sobic004G096400 Sobic006G207200 Sobic006G207200 Sobic001G276200--Sobic006G207200 Sobic003G405500 Sobic003G405500 Sobic001G276200--Sobic003G405500 Sobic003G057700 Sobic003G057700 Sobic001G276200--Sobic003G057700 Sobic007G097400 Sobic007G097400 Sobic001G276200--Sobic007G097400 Sobic005G140500 Sobic005G140500 Sobic002G428800--Sobic005G140500 Sobic002G428800--Sobic004G262700 Sobic007G200900 Sobic007G200900 Sobic002G428800--Sobic007G200900 Sobic002G428800--Sobic001G501300 Sobic002G428800--Sobic003G134000 Sobic003G378400 Sobic003G378400 Sobic002G428800--Sobic003G378400 Sobic002G428800--Sobic010G176300 Sobic004G290000 Sobic004G290000 Sobic002G428800--Sobic004G290000 Sobic002G428800--Sobic010G100800 Sobic003G134000--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic003G134000--Sobic002G155000 Sobic006G058800 Sobic006G058800 Sobic003G134000--Sobic006G058800 Sobic007G075800 Sobic007G075800 Sobic003G134000--Sobic007G075800 Sobic003G134000--Sobic002G428800 Sobic003G134000--Sobic010G100800 Sobic002G364900 Sobic002G364900 Sobic003G134000--Sobic002G364900 Sobic003G134000--Sobic008G165900 Sobic002G092050 Sobic002G092050 Sobic003G134000--Sobic002G092050 Sobic006G089400--Sobic010G100800 Sobic006G089400--Sobic006G058800 Sobic006G089400--Sobic001G501300 Sobic010G143500 Sobic010G143500 Sobic006G089400--Sobic010G143500 Sobic007G029500 Sobic007G029500 Sobic006G089400--Sobic007G029500 Sobic006G089400--Sobic003G134000 Sobic004G176000 Sobic004G176000 Sobic006G089400--Sobic004G176000 Sobic006G089400--Sobic001G207200 Sobic002G191100 Sobic002G191100 Sobic006G089400--Sobic002G191100 Sobic004G337800 Sobic004G337800 Sobic001G070700--Sobic004G337800 Sobic001G070700--Sobic010G176300 Sobic001G405600 Sobic001G405600 Sobic001G070700--Sobic001G405600 Sobic001G070700--Sobic007G097400 Sobic001G070700--Sobic001G276200 Sobic004G171200 Sobic004G171200 Sobic001G070700--Sobic004G171200 Sobic004G175300 Sobic004G175300 Sobic001G070700--Sobic004G175300 Sobic007G105900 Sobic007G105900 Sobic001G070700--Sobic007G105900 Sobic001G070700--Sobic002G364900 Sobic003G182300 Sobic003G182300 Sobic004G318000--Sobic003G182300 Sobic002G242200 Sobic002G242200 Sobic004G318000--Sobic002G242200 Sobic003G016900 Sobic003G016900 Sobic004G318000--Sobic003G016900 Sobic003G062300 Sobic003G062300 Sobic004G318000--Sobic003G062300 Sobic004G318000--Sobic001G276200 Sobic003G363700 Sobic003G363700 Sobic004G318000--Sobic003G363700 Sobic004G309900 Sobic004G309900 Sobic004G318000--Sobic004G309900 Sobic001G492200 Sobic001G492200 Sobic004G318000--Sobic001G492200 Sobic004G318000--Sobic010G176300 Sobic010G100800--Sobic001G501300 Sobic001G261900 Sobic001G261900 Sobic010G100800--Sobic001G261900 Sobic010G100800--Sobic005G026000 Sobic001G300100 Sobic001G300100 Sobic010G100800--Sobic001G300100 Sobic002G404200 Sobic002G404200 Sobic010G100800--Sobic002G404200 Sobic010G086900 Sobic010G086900 Sobic010G100800--Sobic010G086900 Sobic010G100800--Sobic002G031700 Sobic001G275300 Sobic001G275300 Sobic010G100800--Sobic001G275300 Sobic010G100800--Sobic003G193200
Octagon: transcription factors


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