Gene annotation
Transcriptome id Sobic.009G062800.1
Synonym Sb09g005230
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transketolase, chloroplast precursor, putative, expressed
UniProt A0A1B6P733
Pfam PF02780 PF02779 PF00456
Panther DB PTHR11624 PTHR11624:SF81
NCBI CDD -
KEGG Orthology K00615; E2.2.1.1, tktA, transketolase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G45290 : Transketolase
RAP-DB (Rice) LOC_Os06g04270.1 : transketolase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051761 , Zm00025a050138
Brachypodium KQJ82181 , KQK19985
Barley HORVU7Hr1G013600.3 , HORVU7Hr1G013600.2 , HORVU7Hr1G013600.1 , HORVU7Hr1G013600.6 , HORVU7Hr1G013600.5 , HORVU7Hr1G013600.4
Wheat TraesCS2D02G073900 , TraesCS2B02G090100 , TraesCSU02G063400 , TraesCSU02G063400 , TraesCS7A02G071100 , TraesCS7A02G071100 , TraesCS7D02G066500
Populus -


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cDNA sequences
Sobic.009G062800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
2 Sobic.010G074200 - -
3 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
4 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
5 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
6 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
7 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
8 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
9 Sobic.005G145300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBO10 - F-box and other domain containing protein, expressed K12116: flavin-binding kelch repeat F-box protein 1
10 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.001G388400 expressed protein -
12 Sobic.002G217200 oryzain gamma chain precursor, putative, expressed K01366: cathepsin H
13 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
14 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
15 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
16 Sobic.006G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
17 Sobic.001G367500 arginyl-tRNA synthetase, putative, expressed -
18 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
19 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
20 Sobic.002G163700 expressed protein -


Gene co-expression network
sample Sobic009G062800 Sobic009G062800 Sobic010G074100 Sobic010G074100 Sobic009G062800--Sobic010G074100 Sobic010G074200 Sobic010G074200 Sobic009G062800--Sobic010G074200 Sobic009G036300 Sobic009G036300 Sobic009G062800--Sobic009G036300 Sobic007G227600 Sobic007G227600 Sobic009G062800--Sobic007G227600 Sobic008G148400 Sobic008G148400 Sobic009G062800--Sobic008G148400 Sobic009G238100 Sobic009G238100 Sobic009G062800--Sobic009G238100 Sobic009G253000 Sobic009G253000 Sobic009G062800--Sobic009G253000 Sobic010G028000 Sobic010G028000 Sobic009G062800--Sobic010G028000 Sobic005G145300 Sobic005G145300 Sobic009G062800--Sobic005G145300 Sobic010G074100--Sobic007G227600 Sobic010G074100--Sobic010G074200 Sobic010G074100--Sobic009G036300 Sobic001G388400 Sobic001G388400 Sobic010G074100--Sobic001G388400 Sobic010G074100--Sobic010G028000 Sobic009G233800 Sobic009G233800 Sobic010G074100--Sobic009G233800 Sobic010G211500 Sobic010G211500 Sobic010G074100--Sobic010G211500 Sobic010G074100--Sobic009G253000 Sobic010G074100--Sobic009G062800 Sobic006G204100 Sobic006G204100 Sobic010G074200--Sobic006G204100 Sobic010G074200--Sobic010G074100 Sobic010G074200--Sobic001G388400 Sobic010G074200--Sobic009G233800 Sobic010G074200--Sobic009G036300 Sobic010G074200--Sobic010G028000 Sobic010G074200--Sobic007G227600 Sobic009G234200 Sobic009G234200 Sobic010G074200--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic010G074200--Sobic003G330100 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic009G036300--Sobic010G074100 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic007G227600--Sobic009G234200 Sobic007G227600--Sobic010G028000 Sobic007G227600--Sobic010G074200 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic008G148400--Sobic009G238100 Sobic001G426400 Sobic001G426400 Sobic008G148400--Sobic001G426400 Sobic003G030400 Sobic003G030400 Sobic008G148400--Sobic003G030400 Sobic003G222600 Sobic003G222600 Sobic008G148400--Sobic003G222600 Sobic001G423100 Sobic001G423100 Sobic008G148400--Sobic001G423100 Sobic009G154600 Sobic009G154600 Sobic008G148400--Sobic009G154600 Sobic007G131200 Sobic007G131200 Sobic008G148400--Sobic007G131200 Sobic008G148400--Sobic009G233800 Sobic006G265400 Sobic006G265400 Sobic008G148400--Sobic006G265400 Sobic009G238100--Sobic008G148400 Sobic009G238100--Sobic001G426400 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic009G253000--Sobic001G388400 Sobic009G253000--Sobic007G227600 Sobic009G253000--Sobic009G238100 Sobic009G253000--Sobic010G074100 Sobic009G253000--Sobic009G036300 Sobic009G253000--Sobic010G028000 Sobic009G253000--Sobic009G233800 Sobic009G253000--Sobic010G074200 Sobic009G253000--Sobic006G204100 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G028000--Sobic010G074200 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic010G028000--Sobic003G330100 Sobic003G245800 Sobic003G245800 Sobic010G028000--Sobic003G245800 Sobic010G183400 Sobic010G183400 Sobic010G028000--Sobic010G183400 Sobic001G367500 Sobic001G367500 Sobic005G145300--Sobic001G367500 Sobic005G145300--Sobic008G148400 Sobic004G296000 Sobic004G296000 Sobic005G145300--Sobic004G296000 Sobic005G145300--Sobic009G238100 Sobic005G145300--Sobic003G030400 Sobic001G114400 Sobic001G114400 Sobic005G145300--Sobic001G114400 Sobic005G145300--Sobic009G036300 Sobic005G145300--Sobic010G074200 Sobic005G145300--Sobic010G074100
Octagon: transcription factors


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