Gene annotation
Transcriptome id Sobic.004G190700.4,Sobic.004G190700.3
Synonym Sb04g023890
Functional annotation zinc finger, C3HC4 type, putative, expressed
UniProt A0A194YQI5
Pfam PF12906 PF12428
Panther DB PTHR23012 PTHR23012:SF96
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G47550 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os02g36740.1,LOC_Os02g36740.2 : zinc finger, C3HC4 type, putative, expressed
MaizeGDB (Corn) Zm00025a020804 , Zm00025a031728
Brachypodium KQK00022 , KQK00021 , KQK00020
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G190700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G073700 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
2 Sobic.007G029100 ATPase BadF/BadG/BcrA/BcrD type, putative, expressed -
3 Sobic.002G428800 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
4 Sobic.003G053900 zinc finger, C3HC4 type family protein, expressed -
5 Sobic.004G302150 - -
6 Sobic.003G134000 PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G501300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
8 Sobic.007G200900 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
9 Sobic.003G378400 DUF803 domain containing, putative, expressed -
10 Sobic.010G100800 alpha-mannosidase 2, putative, expressed K01231: alpha-mannosidase II
11 Sobic.002G404200 F-box domain containing protein, expressed -
12 Sobic.008G017200 WD domain, G-beta repeat domain containing protein, expressed K14320: aladin
13 Sobic.005G140500 peptidase, M24 family protein, putative, expressed K01262: Xaa-Pro aminopeptidase
14 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
15 Sobic.010G089800 expressed protein -
16 Sobic.010G176300 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
17 Sobic.001G207200 MEE12, putative, expressed -
18 Sobic.008G004300 outer membrane protein, OMP85 family, putative, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
19 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
20 Sobic.002G115100 - -


Gene co-expression network
sample Sobic004G190700 Sobic004G190700 Sobic007G073700 Sobic007G073700 Sobic004G190700--Sobic007G073700 Sobic007G029100 Sobic007G029100 Sobic004G190700--Sobic007G029100 Sobic002G428800 Sobic002G428800 Sobic004G190700--Sobic002G428800 Sobic003G053900 Sobic003G053900 Sobic004G190700--Sobic003G053900 Sobic004G302150 Sobic004G302150 Sobic004G190700--Sobic004G302150 Sobic003G134000 Sobic003G134000 Sobic004G190700--Sobic003G134000 Sobic001G501300 Sobic001G501300 Sobic004G190700--Sobic001G501300 Sobic007G200900 Sobic007G200900 Sobic004G190700--Sobic007G200900 Sobic003G378400 Sobic003G378400 Sobic004G190700--Sobic003G378400 Sobic007G073700--Sobic004G190700 Sobic005G064800 Sobic005G064800 Sobic007G073700--Sobic005G064800 Sobic007G073700--Sobic007G029100 Sobic004G142800 Sobic004G142800 Sobic007G073700--Sobic004G142800 Sobic006G242000 Sobic006G242000 Sobic007G073700--Sobic006G242000 Sobic006G127400 Sobic006G127400 Sobic007G073700--Sobic006G127400 Sobic009G029700 Sobic009G029700 Sobic007G073700--Sobic009G029700 Sobic004G131040 Sobic004G131040 Sobic007G073700--Sobic004G131040 Sobic004G174100 Sobic004G174100 Sobic007G073700--Sobic004G174100 Sobic002G404200 Sobic002G404200 Sobic007G029100--Sobic002G404200 Sobic007G029100--Sobic009G029700 Sobic001G380500 Sobic001G380500 Sobic007G029100--Sobic001G380500 Sobic010G113000 Sobic010G113000 Sobic007G029100--Sobic010G113000 Sobic010G080300 Sobic010G080300 Sobic007G029100--Sobic010G080300 Sobic001G341800 Sobic001G341800 Sobic007G029100--Sobic001G341800 Sobic002G281800 Sobic002G281800 Sobic007G029100--Sobic002G281800 Sobic007G029100--Sobic007G073700 Sobic007G029100--Sobic005G064800 Sobic005G140500 Sobic005G140500 Sobic002G428800--Sobic005G140500 Sobic004G262700 Sobic004G262700 Sobic002G428800--Sobic004G262700 Sobic002G428800--Sobic007G200900 Sobic002G428800--Sobic001G501300 Sobic002G428800--Sobic003G134000 Sobic002G428800--Sobic003G378400 Sobic010G176300 Sobic010G176300 Sobic002G428800--Sobic010G176300 Sobic004G290000 Sobic004G290000 Sobic002G428800--Sobic004G290000 Sobic010G100800 Sobic010G100800 Sobic002G428800--Sobic010G100800 Sobic003G368800 Sobic003G368800 Sobic003G053900--Sobic003G368800 Sobic003G053900--Sobic004G190700 Sobic003G053900--Sobic009G029700 Sobic003G053900--Sobic007G029100 Sobic003G053900--Sobic001G380500 Sobic004G175200 Sobic004G175200 Sobic003G053900--Sobic004G175200 Sobic001G418800 Sobic001G418800 Sobic003G053900--Sobic001G418800 Sobic006G058800 Sobic006G058800 Sobic003G053900--Sobic006G058800 Sobic008G001400 Sobic008G001400 Sobic003G053900--Sobic008G001400 Sobic004G302150--Sobic004G190700 Sobic006G165600 Sobic006G165600 Sobic004G302150--Sobic006G165600 Sobic004G302150--Sobic002G428800 Sobic004G302150--Sobic003G378400 Sobic010G102366 Sobic010G102366 Sobic004G302150--Sobic010G102366 Sobic010G089800 Sobic010G089800 Sobic004G302150--Sobic010G089800 Sobic009G094700 Sobic009G094700 Sobic004G302150--Sobic009G094700 Sobic001G486700 Sobic001G486700 Sobic004G302150--Sobic001G486700 Sobic004G302150--Sobic005G140500 Sobic002G031700 Sobic002G031700 Sobic003G134000--Sobic002G031700 Sobic002G155000 Sobic002G155000 Sobic003G134000--Sobic002G155000 Sobic003G134000--Sobic006G058800 Sobic007G075800 Sobic007G075800 Sobic003G134000--Sobic007G075800 Sobic003G134000--Sobic002G428800 Sobic003G134000--Sobic010G100800 Sobic002G364900 Sobic002G364900 Sobic003G134000--Sobic002G364900 Sobic008G165900 Sobic008G165900 Sobic003G134000--Sobic008G165900 Sobic002G092050 Sobic002G092050 Sobic003G134000--Sobic002G092050 Sobic001G501300--Sobic010G100800 Sobic001G207200 Sobic001G207200 Sobic001G501300--Sobic001G207200 Sobic001G501300--Sobic004G262700 Sobic001G501300--Sobic010G176300 Sobic001G501300--Sobic008G165900 Sobic002G167500 Sobic002G167500 Sobic001G501300--Sobic002G167500 Sobic005G026000 Sobic005G026000 Sobic001G501300--Sobic005G026000 Sobic003G193200 Sobic003G193200 Sobic001G501300--Sobic003G193200 Sobic001G501300--Sobic002G031700 Sobic006G196300 Sobic006G196300 Sobic007G200900--Sobic006G196300 Sobic007G200900--Sobic002G428800 Sobic009G149500 Sobic009G149500 Sobic007G200900--Sobic009G149500 Sobic001G473800 Sobic001G473800 Sobic007G200900--Sobic001G473800 Sobic010G223300 Sobic010G223300 Sobic007G200900--Sobic010G223300 Sobic001G434200 Sobic001G434200 Sobic007G200900--Sobic001G434200 Sobic003G444600 Sobic003G444600 Sobic007G200900--Sobic003G444600 Sobic007G112600 Sobic007G112600 Sobic007G200900--Sobic007G112600 Sobic001G449900 Sobic001G449900 Sobic007G200900--Sobic001G449900 Sobic001G462200 Sobic001G462200 Sobic003G378400--Sobic001G462200 Sobic003G378400--Sobic001G486700 Sobic003G378400--Sobic002G428800 Sobic001G279900 Sobic001G279900 Sobic003G378400--Sobic001G279900 Sobic008G118900 Sobic008G118900 Sobic003G378400--Sobic008G118900 Sobic003G378400--Sobic004G290000 Sobic008G135200 Sobic008G135200 Sobic003G378400--Sobic008G135200 Sobic006G238700 Sobic006G238700 Sobic003G378400--Sobic006G238700 Sobic008G103800 Sobic008G103800 Sobic003G378400--Sobic008G103800
Octagon: transcription factors


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