Gene annotation
Transcriptome id Sobic.001G144600.1
Synonym Sb01g012610, PHP, CDC73
Functional annotation parafibromin, putative, expressed
UniProt C5WQC9 , A0A097PLG6
Pfam PF16050 PF05179
Panther DB PTHR12466 PTHR12466:SF8
NCBI CDD KOG3786; RNA polymerase II assessory factor Cdc73p
KEGG Orthology K15175; parafibromin
Gene Ontology GO:0016593; Cdc73/Paf1 complex GO:0016570histone modification GO:0006368transcription elongation from RNA polymerase II promoter


Orthologs (automatic annotation)
TAIR AT3G22590 : PLANT HOMOLOGOUS TO PARAFIBROMIN
RAP-DB (Rice) LOC_Os03g46190.2 : parafibromin, putative, expressed
MaizeGDB (Corn) Zm00025a017168
Brachypodium KQK13868
Barley HORVU4Hr1G002720.5 , HORVU4Hr1G002720.4 , HORVU4Hr1G002720.7 , HORVU4Hr1G002720.6 , HORVU4Hr1G002720.1 , HORVU4Hr1G002720.3 , HORVU4Hr1G002720.2 , HORVU4Hr1G002720.9 , HORVU4Hr1G002720.8 , HORVU4Hr1G002720.10
Wheat TraesCS4A02G295700 , TraesCS4B02G018200 , TraesCS4D02G016400 , TraesCS3D02G518700 , TraesCS4A02G295700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G368800 expressed protein -
2 Sobic.006G087400 expressed protein -
3 Sobic.001G008800 expressed protein -
4 Sobic.001G036300 aminopeptidase, putative, expressed K01254: leukotriene-A4 hydrolase
5 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
6 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
7 Sobic.009G056300 PHD finger protein, putative, expressed -
8 Sobic.001G276200 ACI13, putative, expressed -
9 Sobic.002G131300 bacterial transferase hexapeptide domain containing protein, expressed -
10 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.002G184400 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
12 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
13 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
14 Sobic.010G161525 - -
15 Sobic.009G112400 OsFBX361 - F-box domain containing protein, expressed -
16 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
17 Sobic.003G209400 expressed protein -
18 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
19 Sobic.002G408600 expressed protein -
20 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma


Gene co-expression network
sample Sobic001G144600 Sobic001G144600 Sobic003G368800 Sobic003G368800 Sobic001G144600--Sobic003G368800 Sobic006G087400 Sobic006G087400 Sobic001G144600--Sobic006G087400 Sobic001G008800 Sobic001G008800 Sobic001G144600--Sobic001G008800 Sobic001G036300 Sobic001G036300 Sobic001G144600--Sobic001G036300 Sobic003G058900 Sobic003G058900 Sobic001G144600--Sobic003G058900 Sobic010G085200 Sobic010G085200 Sobic001G144600--Sobic010G085200 Sobic009G056300 Sobic009G056300 Sobic001G144600--Sobic009G056300 Sobic001G276200 Sobic001G276200 Sobic001G144600--Sobic001G276200 Sobic002G131300 Sobic002G131300 Sobic001G144600--Sobic002G131300 Sobic003G368800--Sobic001G144600 Sobic002G174900 Sobic002G174900 Sobic003G368800--Sobic002G174900 Sobic005G025300 Sobic005G025300 Sobic003G368800--Sobic005G025300 Sobic002G040800 Sobic002G040800 Sobic003G368800--Sobic002G040800 Sobic004G147200 Sobic004G147200 Sobic003G368800--Sobic004G147200 Sobic002G227200 Sobic002G227200 Sobic003G368800--Sobic002G227200 Sobic004G227300 Sobic004G227300 Sobic003G368800--Sobic004G227300 Sobic003G368800--Sobic001G276200 Sobic001G429300 Sobic001G429300 Sobic003G368800--Sobic001G429300 Sobic005G155800 Sobic005G155800 Sobic006G087400--Sobic005G155800 Sobic006G087400--Sobic001G144600 Sobic002G259400 Sobic002G259400 Sobic006G087400--Sobic002G259400 Sobic009G174000 Sobic009G174000 Sobic006G087400--Sobic009G174000 Sobic006G087400--Sobic001G008800 Sobic002G294100 Sobic002G294100 Sobic006G087400--Sobic002G294100 Sobic002G058700 Sobic002G058700 Sobic006G087400--Sobic002G058700 Sobic009G120500 Sobic009G120500 Sobic006G087400--Sobic009G120500 Sobic010G230600 Sobic010G230600 Sobic006G087400--Sobic010G230600 Sobic001G129400 Sobic001G129400 Sobic001G008800--Sobic001G129400 Sobic003G326900 Sobic003G326900 Sobic001G008800--Sobic003G326900 Sobic001G132900 Sobic001G132900 Sobic001G008800--Sobic001G132900 Sobic003G003000 Sobic003G003000 Sobic001G008800--Sobic003G003000 Sobic004G136500 Sobic004G136500 Sobic001G008800--Sobic004G136500 Sobic004G117800 Sobic004G117800 Sobic001G008800--Sobic004G117800 Sobic001G008800--Sobic001G144600 Sobic001G008800--Sobic006G087400 Sobic001G451901 Sobic001G451901 Sobic001G008800--Sobic001G451901 Sobic001G541000 Sobic001G541000 Sobic001G036300--Sobic001G541000 Sobic009G256700 Sobic009G256700 Sobic001G036300--Sobic009G256700 Sobic001G300000 Sobic001G300000 Sobic001G036300--Sobic001G300000 Sobic003G177000 Sobic003G177000 Sobic001G036300--Sobic003G177000 Sobic001G036300--Sobic001G144600 Sobic002G152900 Sobic002G152900 Sobic001G036300--Sobic002G152900 Sobic002G425200 Sobic002G425200 Sobic001G036300--Sobic002G425200 Sobic003G115400 Sobic003G115400 Sobic001G036300--Sobic003G115400 Sobic010G161525 Sobic010G161525 Sobic001G036300--Sobic010G161525 Sobic001G099800 Sobic001G099800 Sobic003G058900--Sobic001G099800 Sobic004G095300 Sobic004G095300 Sobic003G058900--Sobic004G095300 Sobic010G171100 Sobic010G171100 Sobic003G058900--Sobic010G171100 Sobic007G180000 Sobic007G180000 Sobic003G058900--Sobic007G180000 Sobic008G125000 Sobic008G125000 Sobic003G058900--Sobic008G125000 Sobic003G058900--Sobic002G058700 Sobic003G058900--Sobic004G117800 Sobic003G058900--Sobic001G144600 Sobic001G335500 Sobic001G335500 Sobic003G058900--Sobic001G335500 Sobic005G220000 Sobic005G220000 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic009G056300--Sobic008G125000 Sobic004G206300 Sobic004G206300 Sobic009G056300--Sobic004G206300 Sobic002G224700 Sobic002G224700 Sobic009G056300--Sobic002G224700 Sobic009G194300 Sobic009G194300 Sobic009G056300--Sobic009G194300 Sobic001G041200 Sobic001G041200 Sobic009G056300--Sobic001G041200 Sobic001G080000 Sobic001G080000 Sobic009G056300--Sobic001G080000 Sobic004G027000 Sobic004G027000 Sobic009G056300--Sobic004G027000 Sobic002G394800 Sobic002G394800 Sobic009G056300--Sobic002G394800 Sobic001G152000 Sobic001G152000 Sobic009G056300--Sobic001G152000 Sobic006G077200 Sobic006G077200 Sobic001G276200--Sobic006G077200 Sobic001G449900 Sobic001G449900 Sobic001G276200--Sobic001G449900 Sobic001G493200 Sobic001G493200 Sobic001G276200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic001G276200--Sobic003G249600 Sobic004G096400 Sobic004G096400 Sobic001G276200--Sobic004G096400 Sobic006G207200 Sobic006G207200 Sobic001G276200--Sobic006G207200 Sobic003G405500 Sobic003G405500 Sobic001G276200--Sobic003G405500 Sobic003G057700 Sobic003G057700 Sobic001G276200--Sobic003G057700 Sobic007G097400 Sobic007G097400 Sobic001G276200--Sobic007G097400 Sobic006G047100 Sobic006G047100 Sobic002G131300--Sobic006G047100 Sobic003G142700 Sobic003G142700 Sobic002G131300--Sobic003G142700 Sobic001G191100 Sobic001G191100 Sobic002G131300--Sobic001G191100 Sobic002G131300--Sobic002G174900 Sobic009G112400 Sobic009G112400 Sobic002G131300--Sobic009G112400 Sobic010G256800 Sobic010G256800 Sobic002G131300--Sobic010G256800 Sobic002G192500 Sobic002G192500 Sobic002G131300--Sobic002G192500 Sobic003G000150 Sobic003G000150 Sobic002G131300--Sobic003G000150 Sobic008G133400 Sobic008G133400 Sobic002G131300--Sobic008G133400
Octagon: transcription factors


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