Gene annotation
Transcriptome id Sobic.001G320200.1
Synonym PLDBETA, Sb01g031100, PLDBETA1
Functional annotation phospholipase D, putative, expressed
UniProt C5WUK8
Pfam PF13091 PF00614 PF00168 PF12357
Panther DB PTHR18896 PTHR18896:SF15
NCBI CDD -
KEGG Orthology K01115; phospholipase D1/2
Gene Ontology GO:0003824; catalytic activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G42010 : phospholipase D beta 1
RAP-DB (Rice) LOC_Os10g38060.1 : phospholipase D, putative, expressed
MaizeGDB (Corn) Zm00025a003094
Brachypodium PNT67755 , PNT67757 , PNT67756 , KQJ97534 , KQJ97533
Barley HORVU1Hr1G048970.3 , HORVU1Hr1G048970.2 , HORVU1Hr1G048970.1 , HORVU1Hr1G048970.6 , HORVU1Hr1G048970.5 , HORVU1Hr1G048970.4 , HORVU1Hr1G079150.1 , HORVU1Hr1G079150.3 , HORVU1Hr1G079150.2 , HORVU1Hr1G079150.4 , HORVU1Hr1G079150.7 , HORVU1Hr1G079150.6 , HORVU1Hr1G077830.1
Wheat TraesCS1A02G187400 , TraesCS1B02G195200 , TraesCS1B02G382600 , TraesCS1D02G370600 , TraesCS1D02G189300 , TraesCS1A02G365100 , TraesCS1A02G365100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pollen ankyrin, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
2 Sobic.003G097100 receptor kinase ORK10, putative, expressed -
3 Sobic.003G206800 DUF538 domain containing protein, putative, expressed -
4 Sobic.003G365000 cytochrome P450, putative, expressed -
5 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
6 Sobic.003G200100 DUF630/DUF632 domains containing protein, putative, expressed -
7 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.007G135000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
9 Sobic.006G242000 oryzain beta chain precursor, putative, expressed -
10 Sobic.010G113000 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
11 Sobic.003G388251 - K01166: ribonuclease T2
12 Sobic.003G404200 expressed protein -
13 Sobic.004G131040 - K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX
14 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
15 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
17 Sobic.002G230500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.008G001400 expressed protein -
19 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
20 Sobic.009G241300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G320200 Sobic001G320200 Sobic010G018100 Sobic010G018100 Sobic001G320200--Sobic010G018100 Sobic003G097100 Sobic003G097100 Sobic001G320200--Sobic003G097100 Sobic003G206800 Sobic003G206800 Sobic001G320200--Sobic003G206800 Sobic003G365000 Sobic003G365000 Sobic001G320200--Sobic003G365000 Sobic006G028100 Sobic006G028100 Sobic001G320200--Sobic006G028100 Sobic003G200100 Sobic003G200100 Sobic001G320200--Sobic003G200100 Sobic001G130000 Sobic001G130000 Sobic001G320200--Sobic001G130000 Sobic007G135000 Sobic007G135000 Sobic001G320200--Sobic007G135000 Sobic006G242000 Sobic006G242000 Sobic001G320200--Sobic006G242000 Sobic010G043400 Sobic010G043400 Sobic010G018100--Sobic010G043400 Sobic001G222200 Sobic001G222200 Sobic010G018100--Sobic001G222200 Sobic002G274800 Sobic002G274800 Sobic010G018100--Sobic002G274800 Sobic004G124200 Sobic004G124200 Sobic010G018100--Sobic004G124200 Sobic010G018100--Sobic001G320200 Sobic003G363100 Sobic003G363100 Sobic010G018100--Sobic003G363100 Sobic008G189200 Sobic008G189200 Sobic010G018100--Sobic008G189200 Sobic003G388251 Sobic003G388251 Sobic010G018100--Sobic003G388251 Sobic002G215800 Sobic002G215800 Sobic010G018100--Sobic002G215800 Sobic003G097100--Sobic007G135000 Sobic003G097100--Sobic006G242000 Sobic009G241300 Sobic009G241300 Sobic003G097100--Sobic009G241300 Sobic003G097100--Sobic006G028100 Sobic003G097100--Sobic001G320200 Sobic009G241400 Sobic009G241400 Sobic003G097100--Sobic009G241400 Sobic003G022600 Sobic003G022600 Sobic003G097100--Sobic003G022600 Sobic001G469500 Sobic001G469500 Sobic003G097100--Sobic001G469500 Sobic002G130700 Sobic002G130700 Sobic003G097100--Sobic002G130700 Sobic002G048800 Sobic002G048800 Sobic003G206800--Sobic002G048800 Sobic003G206800--Sobic001G320200 Sobic001G340700 Sobic001G340700 Sobic003G206800--Sobic001G340700 Sobic003G314500 Sobic003G314500 Sobic003G206800--Sobic003G314500 Sobic003G206800--Sobic002G130700 Sobic008G001400 Sobic008G001400 Sobic003G206800--Sobic008G001400 Sobic002G073900 Sobic002G073900 Sobic003G206800--Sobic002G073900 Sobic008G142600 Sobic008G142600 Sobic003G206800--Sobic008G142600 Sobic001G427200 Sobic001G427200 Sobic003G206800--Sobic001G427200 Sobic009G034700 Sobic009G034700 Sobic003G365000--Sobic009G034700 Sobic003G365000--Sobic004G124200 Sobic003G365000--Sobic003G388251 Sobic003G116900 Sobic003G116900 Sobic003G365000--Sobic003G116900 Sobic010G192800 Sobic010G192800 Sobic003G365000--Sobic010G192800 Sobic005G178100 Sobic005G178100 Sobic003G365000--Sobic005G178100 Sobic003G365000--Sobic001G130000 Sobic003G404200 Sobic003G404200 Sobic003G365000--Sobic003G404200 Sobic003G365000--Sobic001G320200 Sobic006G028100--Sobic006G242000 Sobic004G182600 Sobic004G182600 Sobic006G028100--Sobic004G182600 Sobic004G345800 Sobic004G345800 Sobic006G028100--Sobic004G345800 Sobic006G028100--Sobic001G130000 Sobic006G028100--Sobic003G097100 Sobic003G061800 Sobic003G061800 Sobic006G028100--Sobic003G061800 Sobic001G392400 Sobic001G392400 Sobic006G028100--Sobic001G392400 Sobic002G315800 Sobic002G315800 Sobic006G028100--Sobic002G315800 Sobic006G157600 Sobic006G157600 Sobic006G028100--Sobic006G157600 Sobic004G065000 Sobic004G065000 Sobic003G200100--Sobic004G065000 Sobic010G001500 Sobic010G001500 Sobic003G200100--Sobic010G001500 Sobic004G265800 Sobic004G265800 Sobic003G200100--Sobic004G265800 Sobic009G133500 Sobic009G133500 Sobic003G200100--Sobic009G133500 Sobic001G111150 Sobic001G111150 Sobic003G200100--Sobic001G111150 Sobic010G130200 Sobic010G130200 Sobic003G200100--Sobic010G130200 Sobic006G204900 Sobic006G204900 Sobic003G200100--Sobic006G204900 Sobic002G415900 Sobic002G415900 Sobic003G200100--Sobic002G415900 Sobic001G436900 Sobic001G436900 Sobic003G200100--Sobic001G436900 Sobic001G474500 Sobic001G474500 Sobic001G130000--Sobic001G474500 Sobic001G130000--Sobic009G034700 Sobic007G068100 Sobic007G068100 Sobic001G130000--Sobic007G068100 Sobic001G130000--Sobic003G388251 Sobic001G325200 Sobic001G325200 Sobic001G130000--Sobic001G325200 Sobic001G069900 Sobic001G069900 Sobic001G130000--Sobic001G069900 Sobic008G079300 Sobic008G079300 Sobic001G130000--Sobic008G079300 Sobic008G017800 Sobic008G017800 Sobic001G130000--Sobic008G017800 Sobic001G130000--Sobic004G345800 Sobic007G135000--Sobic003G097100 Sobic007G135000--Sobic009G241300 Sobic007G135000--Sobic001G469500 Sobic007G135000--Sobic003G022600 Sobic003G039700 Sobic003G039700 Sobic007G135000--Sobic003G039700 Sobic007G135000--Sobic009G241400 Sobic007G135000--Sobic003G363100 Sobic007G135000--Sobic006G242000 Sobic007G135000--Sobic010G192800 Sobic006G242000--Sobic003G097100 Sobic006G242000--Sobic006G028100 Sobic002G217200 Sobic002G217200 Sobic006G242000--Sobic002G217200 Sobic004G174100 Sobic004G174100 Sobic006G242000--Sobic004G174100 Sobic006G242000--Sobic007G135000 Sobic006G242000--Sobic002G130700 Sobic006G242000--Sobic003G022600 Sobic005G064800 Sobic005G064800 Sobic006G242000--Sobic005G064800 Sobic006G242000--Sobic001G320200
Octagon: transcription factors


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