Gene annotation
Transcriptome id Sobic.005G043600.2
Synonym
Functional annotation coatomer subunit beta, putative, expressed
UniProt A0A1B6PQ27
Pfam PF03178
Panther DB PTHR19876 PTHR19876:SF8
NCBI CDD KOG0285; Pleiotropic regulator 1
KEGG Orthology K17302; COPB2, coatomer subunit beta'
Gene Ontology GO:0005634; nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G79990 : structural molecules
RAP-DB (Rice) LOC_Os02g11830.2 : coatomer subunit beta, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G198500 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
2 Sobic.002G058200 SAM dependent carboxyl methyltransferase, putative, expressed -
3 Sobic.005G043900 protein kinase domain containing protein, expressed -
4 Sobic.008G175032 - -
5 Sobic.002G098200 expressed protein -
6 Sobic.008G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@citrate-binding protein precursor, putative, expressed -
7 Sobic.003G203200 hypothetical protein -
8 Sobic.001G359500 cytochrome P450, putative, expressed -
9 Sobic.001G247550 - -
10 Sobic.001G247550 - -
11 Sobic.001G247550 - -
12 Sobic.006G246600 DUF538 domain containing protein, putative, expressed -
13 Sobic.007G034000 expressed protein -
14 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
15 Sobic.009G012900 leucine rich repeat protein, putative, expressed -
16 Sobic.003G251301 - -
17 Sobic.001G354400 O-methyltransferase, putative, expressed -
18 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
19 Sobic.003G216000 pleiotropic drug resistance protein, putative, expressed -
20 Sobic.001G187700 expressed protein -


Gene co-expression network
sample Sobic005G043600 Sobic005G043600 Sobic007G198500 Sobic007G198500 Sobic005G043600--Sobic007G198500 Sobic002G058200 Sobic002G058200 Sobic005G043600--Sobic002G058200 Sobic005G043900 Sobic005G043900 Sobic005G043600--Sobic005G043900 Sobic008G175032 Sobic008G175032 Sobic005G043600--Sobic008G175032 Sobic002G098200 Sobic002G098200 Sobic005G043600--Sobic002G098200 Sobic008G048900 Sobic008G048900 Sobic005G043600--Sobic008G048900 Sobic003G203200 Sobic003G203200 Sobic005G043600--Sobic003G203200 Sobic001G359500 Sobic001G359500 Sobic005G043600--Sobic001G359500 Sobic001G247550 Sobic001G247550 Sobic005G043600--Sobic001G247550 Sobic007G198500--Sobic005G043600 Sobic007G198500--Sobic008G048900 Sobic007G198500--Sobic008G175032 Sobic007G198500--Sobic001G359500 Sobic007G198500--Sobic001G247550 Sobic007G198500--Sobic003G203200 Sobic007G198500--Sobic005G043900 Sobic003G251301 Sobic003G251301 Sobic002G058200--Sobic003G251301 Sobic003G216000 Sobic003G216000 Sobic002G058200--Sobic003G216000 Sobic009G012900 Sobic009G012900 Sobic002G058200--Sobic009G012900 Sobic002G058200--Sobic005G043600 Sobic002G058200--Sobic002G098200 Sobic002G058200--Sobic008G175032 Sobic010G170550 Sobic010G170550 Sobic002G058200--Sobic010G170550 Sobic002G011600 Sobic002G011600 Sobic002G058200--Sobic002G011600 Sobic002G100700 Sobic002G100700 Sobic002G058200--Sobic002G100700 Sobic005G043900--Sobic003G203200 Sobic006G246600 Sobic006G246600 Sobic005G043900--Sobic006G246600 Sobic005G043900--Sobic005G043600 Sobic005G043900--Sobic008G048900 Sobic002G089100 Sobic002G089100 Sobic005G043900--Sobic002G089100 Sobic002G088900 Sobic002G088900 Sobic005G043900--Sobic002G088900 Sobic006G091700 Sobic006G091700 Sobic005G043900--Sobic006G091700 Sobic008G074400 Sobic008G074400 Sobic005G043900--Sobic008G074400 Sobic001G316400 Sobic001G316400 Sobic005G043900--Sobic001G316400 Sobic008G175032--Sobic002G058200 Sobic008G175032--Sobic005G043600 Sobic008G175032--Sobic010G170550 Sobic008G175032--Sobic007G198500 Sobic008G175032--Sobic009G012900 Sobic008G175032--Sobic003G251301 Sobic008G175032--Sobic002G098200 Sobic008G175032--Sobic003G216000 Sobic009G029600 Sobic009G029600 Sobic008G175032--Sobic009G029600 Sobic002G098200--Sobic002G058200 Sobic004G304200 Sobic004G304200 Sobic002G098200--Sobic004G304200 Sobic002G098200--Sobic003G216000 Sobic005G137400 Sobic005G137400 Sobic002G098200--Sobic005G137400 Sobic002G098200--Sobic005G043600 Sobic002G098200--Sobic009G012900 Sobic002G098200--Sobic002G100700 Sobic004G169700 Sobic004G169700 Sobic002G098200--Sobic004G169700 Sobic002G098200--Sobic002G011600 Sobic008G048900--Sobic001G247550 Sobic008G048900--Sobic006G246600 Sobic008G048900--Sobic007G198500 Sobic008G048900--Sobic005G043600 Sobic008G048900--Sobic005G043900 Sobic001G354400 Sobic001G354400 Sobic008G048900--Sobic001G354400 Sobic008G048900--Sobic003G203200 Sobic002G122800 Sobic002G122800 Sobic003G203200--Sobic002G122800 Sobic003G203200--Sobic001G354400 Sobic003G203200--Sobic001G316400 Sobic003G203200--Sobic005G043900 Sobic009G114000 Sobic009G114000 Sobic003G203200--Sobic009G114000 Sobic003G203200--Sobic006G091700 Sobic002G085300 Sobic002G085300 Sobic003G203200--Sobic002G085300 Sobic006G181300 Sobic006G181300 Sobic003G203200--Sobic006G181300 Sobic003G203200--Sobic006G246600 Sobic001G359500--Sobic006G181300 Sobic002G338100 Sobic002G338100 Sobic001G359500--Sobic002G338100 Sobic001G504900 Sobic001G504900 Sobic001G359500--Sobic001G504900 Sobic009G207600 Sobic009G207600 Sobic001G359500--Sobic009G207600 Sobic001G176600 Sobic001G176600 Sobic001G359500--Sobic001G176600 Sobic009G226600 Sobic009G226600 Sobic001G359500--Sobic009G226600 Sobic007G034000 Sobic007G034000 Sobic001G359500--Sobic007G034000 Sobic001G359500--Sobic008G074400 Sobic010G205200 Sobic010G205200 Sobic001G359500--Sobic010G205200 Sobic001G247550--Sobic001G247550 Sobic001G247550--Sobic008G048900 Sobic008G091614 Sobic008G091614 Sobic001G247550--Sobic008G091614 Sobic002G011700 Sobic002G011700 Sobic001G247550--Sobic002G011700 Sobic001G247550--Sobic005G043600 Sobic001G247550--Sobic007G198500 Sobic010G057200 Sobic010G057200 Sobic001G247550--Sobic010G057200 Sobic009G023501 Sobic009G023501 Sobic001G247550--Sobic009G023501
Octagon: transcription factors


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