Gene annotation
Transcriptome id Sobic.006G246600.1
Synonym Sb06g031200
Functional annotation DUF538 domain containing protein, putative, expressed
UniProt C5Y9H6
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09310 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os07g02850.1 : DUF538 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009479 , Zm00025a044909 , Zm00025a009480
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G013000 DUF538 domain containing protein, putative, expressed -
2 Sobic.002G089100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
3 Sobic.005G043900 protein kinase domain containing protein, expressed -
4 Sobic.003G204501 - -
5 Sobic.003G203200 hypothetical protein -
6 Sobic.002G088900 DUF538 domain containing protein, putative, expressed -
7 Sobic.001G316400 heavy metal-associated domain containing protein, expressed -
8 Sobic.001G354400 O-methyltransferase, putative, expressed -
9 Sobic.008G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@citrate-binding protein precursor, putative, expressed -
10 Sobic.004G008800 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
11 Sobic.002G122800 expressed protein -
12 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
13 Sobic.005G043600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
14 Sobic.008G074400 glutathione S-transferase, putative, expressed K01800: maiA, maleylacetoacetate isomerase
15 Sobic.003G188100 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
16 Sobic.010G126900 lectin-like receptor kinase, putative, expressed -
17 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
18 Sobic.006G082000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSub41 - Putative Subtilisin homologue, expressed -
19 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase


Gene co-expression network
sample Sobic006G246600 Sobic006G246600 Sobic002G013000 Sobic002G013000 Sobic006G246600--Sobic002G013000 Sobic002G089100 Sobic002G089100 Sobic006G246600--Sobic002G089100 Sobic005G043900 Sobic005G043900 Sobic006G246600--Sobic005G043900 Sobic003G204501 Sobic003G204501 Sobic006G246600--Sobic003G204501 Sobic003G203200 Sobic003G203200 Sobic006G246600--Sobic003G203200 Sobic002G088900 Sobic002G088900 Sobic006G246600--Sobic002G088900 Sobic001G316400 Sobic001G316400 Sobic006G246600--Sobic001G316400 Sobic001G354400 Sobic001G354400 Sobic006G246600--Sobic001G354400 Sobic008G048900 Sobic008G048900 Sobic006G246600--Sobic008G048900 Sobic002G013000--Sobic002G089100 Sobic002G013000--Sobic002G088900 Sobic002G013000--Sobic003G204501 Sobic002G013000--Sobic006G246600 Sobic004G008800 Sobic004G008800 Sobic002G013000--Sobic004G008800 Sobic010G126900 Sobic010G126900 Sobic002G013000--Sobic010G126900 Sobic003G188100 Sobic003G188100 Sobic002G013000--Sobic003G188100 Sobic002G013000--Sobic001G316400 Sobic003G080900 Sobic003G080900 Sobic002G013000--Sobic003G080900 Sobic002G089100--Sobic002G013000 Sobic002G089100--Sobic004G008800 Sobic002G089100--Sobic002G088900 Sobic002G089100--Sobic006G246600 Sobic002G089100--Sobic003G204501 Sobic002G089100--Sobic005G043900 Sobic002G089100--Sobic001G316400 Sobic002G089100--Sobic003G203200 Sobic002G089100--Sobic003G188100 Sobic005G043900--Sobic003G203200 Sobic005G043900--Sobic006G246600 Sobic005G043600 Sobic005G043600 Sobic005G043900--Sobic005G043600 Sobic005G043900--Sobic008G048900 Sobic005G043900--Sobic002G089100 Sobic005G043900--Sobic002G088900 Sobic006G091700 Sobic006G091700 Sobic005G043900--Sobic006G091700 Sobic008G074400 Sobic008G074400 Sobic005G043900--Sobic008G074400 Sobic005G043900--Sobic001G316400 Sobic003G204501--Sobic004G008800 Sobic003G204501--Sobic002G013000 Sobic003G204501--Sobic002G088900 Sobic003G204501--Sobic002G089100 Sobic003G204501--Sobic006G246600 Sobic007G109900 Sobic007G109900 Sobic003G204501--Sobic007G109900 Sobic003G204501--Sobic001G316400 Sobic002G122800 Sobic002G122800 Sobic003G204501--Sobic002G122800 Sobic009G114000 Sobic009G114000 Sobic003G204501--Sobic009G114000 Sobic003G203200--Sobic002G122800 Sobic003G203200--Sobic001G354400 Sobic003G203200--Sobic001G316400 Sobic003G203200--Sobic005G043900 Sobic003G203200--Sobic009G114000 Sobic003G203200--Sobic006G091700 Sobic002G085300 Sobic002G085300 Sobic003G203200--Sobic002G085300 Sobic006G181300 Sobic006G181300 Sobic003G203200--Sobic006G181300 Sobic003G203200--Sobic006G246600 Sobic002G088900--Sobic002G013000 Sobic002G088900--Sobic002G089100 Sobic002G088900--Sobic003G204501 Sobic002G088900--Sobic004G008800 Sobic002G088900--Sobic006G246600 Sobic004G106900 Sobic004G106900 Sobic002G088900--Sobic004G106900 Sobic002G088900--Sobic005G043900 Sobic003G149200 Sobic003G149200 Sobic002G088900--Sobic003G149200 Sobic002G088900--Sobic002G085300 Sobic001G316400--Sobic003G203200 Sobic001G316400--Sobic002G122800 Sobic001G316400--Sobic008G074400 Sobic001G316400--Sobic006G181300 Sobic001G504900 Sobic001G504900 Sobic001G316400--Sobic001G504900 Sobic001G316400--Sobic002G085300 Sobic001G316400--Sobic009G114000 Sobic001G316400--Sobic006G091700 Sobic001G316400--Sobic001G354400 Sobic001G354400--Sobic003G203200 Sobic001G354400--Sobic002G122800 Sobic001G354400--Sobic001G316400 Sobic001G354400--Sobic006G181300 Sobic001G354400--Sobic006G246600 Sobic004G226100 Sobic004G226100 Sobic001G354400--Sobic004G226100 Sobic005G169400 Sobic005G169400 Sobic001G354400--Sobic005G169400 Sobic001G354400--Sobic009G114000 Sobic001G354400--Sobic008G048900 Sobic001G247550 Sobic001G247550 Sobic008G048900--Sobic001G247550 Sobic008G048900--Sobic006G246600 Sobic007G198500 Sobic007G198500 Sobic008G048900--Sobic007G198500 Sobic008G048900--Sobic005G043600 Sobic008G048900--Sobic005G043900 Sobic008G048900--Sobic001G354400 Sobic008G048900--Sobic003G203200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.