Gene annotation
Transcriptome id Sobic.004G008800.1
Synonym SBH2, Sb04g000930
Functional annotation sphingolipid C4-hydroxylase SUR2, putative, expressed
UniProt C5XS74
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF52
NCBI CDD KOG0874; Sphingolipid hydroxylase
KEGG Orthology K04713; sphinganine C4-monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G14290 : sphingoid base hydroxylase 2
RAP-DB (Rice) LOC_Os06g22490.1 : sphingolipid C4-hydroxylase SUR2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G089100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
2 Sobic.003G204501 - -
3 Sobic.002G088900 DUF538 domain containing protein, putative, expressed -
4 Sobic.002G013000 DUF538 domain containing protein, putative, expressed -
5 Sobic.003G111300 PIII1 - Proteinase inhibitor II family protein precursor, expressed -
6 Sobic.007G109900 bZIP transcription factor domain containing protein, expressed -
7 Sobic.006G246600 DUF538 domain containing protein, putative, expressed -
8 Sobic.001G316400 heavy metal-associated domain containing protein, expressed -
9 Sobic.002G122800 expressed protein -
10 Sobic.003G188100 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.003G265100 lipid phosphatase protein, putative, expressed -
12 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
13 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
14 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
15 Sobic.001G354400 O-methyltransferase, putative, expressed -
16 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
17 Sobic.005G169400 WIP5 - Wound-induced protein precursor, expressed -
18 Sobic.003G442500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CESA2 - cellulose synthase, expressed -
19 Sobic.003G203200 hypothetical protein -
20 Sobic.006G132500 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase


Gene co-expression network
sample Sobic004G008800 Sobic004G008800 Sobic002G089100 Sobic002G089100 Sobic004G008800--Sobic002G089100 Sobic003G204501 Sobic003G204501 Sobic004G008800--Sobic003G204501 Sobic002G088900 Sobic002G088900 Sobic004G008800--Sobic002G088900 Sobic002G013000 Sobic002G013000 Sobic004G008800--Sobic002G013000 Sobic003G111300 Sobic003G111300 Sobic004G008800--Sobic003G111300 Sobic007G109900 Sobic007G109900 Sobic004G008800--Sobic007G109900 Sobic006G246600 Sobic006G246600 Sobic004G008800--Sobic006G246600 Sobic001G316400 Sobic001G316400 Sobic004G008800--Sobic001G316400 Sobic002G122800 Sobic002G122800 Sobic004G008800--Sobic002G122800 Sobic002G089100--Sobic002G013000 Sobic002G089100--Sobic004G008800 Sobic002G089100--Sobic002G088900 Sobic002G089100--Sobic006G246600 Sobic002G089100--Sobic003G204501 Sobic005G043900 Sobic005G043900 Sobic002G089100--Sobic005G043900 Sobic002G089100--Sobic001G316400 Sobic003G203200 Sobic003G203200 Sobic002G089100--Sobic003G203200 Sobic003G188100 Sobic003G188100 Sobic002G089100--Sobic003G188100 Sobic003G204501--Sobic004G008800 Sobic003G204501--Sobic002G013000 Sobic003G204501--Sobic002G088900 Sobic003G204501--Sobic002G089100 Sobic003G204501--Sobic006G246600 Sobic003G204501--Sobic007G109900 Sobic003G204501--Sobic001G316400 Sobic003G204501--Sobic002G122800 Sobic009G114000 Sobic009G114000 Sobic003G204501--Sobic009G114000 Sobic002G088900--Sobic002G013000 Sobic002G088900--Sobic002G089100 Sobic002G088900--Sobic003G204501 Sobic002G088900--Sobic004G008800 Sobic002G088900--Sobic006G246600 Sobic004G106900 Sobic004G106900 Sobic002G088900--Sobic004G106900 Sobic002G088900--Sobic005G043900 Sobic003G149200 Sobic003G149200 Sobic002G088900--Sobic003G149200 Sobic002G085300 Sobic002G085300 Sobic002G088900--Sobic002G085300 Sobic002G013000--Sobic002G089100 Sobic002G013000--Sobic002G088900 Sobic002G013000--Sobic003G204501 Sobic002G013000--Sobic006G246600 Sobic002G013000--Sobic004G008800 Sobic010G126900 Sobic010G126900 Sobic002G013000--Sobic010G126900 Sobic002G013000--Sobic003G188100 Sobic002G013000--Sobic001G316400 Sobic003G080900 Sobic003G080900 Sobic002G013000--Sobic003G080900 Sobic006G132500 Sobic006G132500 Sobic003G111300--Sobic006G132500 Sobic003G111200 Sobic003G111200 Sobic003G111300--Sobic003G111200 Sobic003G111300--Sobic004G008800 Sobic006G155000 Sobic006G155000 Sobic003G111300--Sobic006G155000 Sobic010G210200 Sobic010G210200 Sobic003G111300--Sobic010G210200 Sobic003G111300--Sobic002G122800 Sobic003G442500 Sobic003G442500 Sobic003G111300--Sobic003G442500 Sobic003G061400 Sobic003G061400 Sobic003G111300--Sobic003G061400 Sobic005G169400 Sobic005G169400 Sobic003G111300--Sobic005G169400 Sobic007G109900--Sobic003G204501 Sobic007G109900--Sobic004G008800 Sobic002G087800 Sobic002G087800 Sobic007G109900--Sobic002G087800 Sobic007G109900--Sobic005G169400 Sobic007G128600 Sobic007G128600 Sobic007G109900--Sobic007G128600 Sobic006G244400 Sobic006G244400 Sobic007G109900--Sobic006G244400 Sobic003G428400 Sobic003G428400 Sobic007G109900--Sobic003G428400 Sobic005G024900 Sobic005G024900 Sobic007G109900--Sobic005G024900 Sobic001G322700 Sobic001G322700 Sobic007G109900--Sobic001G322700 Sobic006G246600--Sobic002G013000 Sobic006G246600--Sobic002G089100 Sobic006G246600--Sobic005G043900 Sobic006G246600--Sobic003G204501 Sobic006G246600--Sobic003G203200 Sobic006G246600--Sobic002G088900 Sobic006G246600--Sobic001G316400 Sobic001G354400 Sobic001G354400 Sobic006G246600--Sobic001G354400 Sobic008G048900 Sobic008G048900 Sobic006G246600--Sobic008G048900 Sobic001G316400--Sobic003G203200 Sobic001G316400--Sobic002G122800 Sobic008G074400 Sobic008G074400 Sobic001G316400--Sobic008G074400 Sobic006G181300 Sobic006G181300 Sobic001G316400--Sobic006G181300 Sobic001G504900 Sobic001G504900 Sobic001G316400--Sobic001G504900 Sobic001G316400--Sobic002G085300 Sobic001G316400--Sobic009G114000 Sobic006G091700 Sobic006G091700 Sobic001G316400--Sobic006G091700 Sobic001G316400--Sobic001G354400 Sobic002G122800--Sobic009G114000 Sobic002G122800--Sobic003G111200 Sobic002G122800--Sobic003G203200 Sobic002G122800--Sobic005G169400 Sobic002G122800--Sobic001G316400 Sobic002G122800--Sobic001G354400 Sobic002G122800--Sobic006G181300 Sobic002G122800--Sobic006G091700 Sobic002G122800--Sobic002G085300
Octagon: transcription factors


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