Gene annotation
Transcriptome id Sobic.003G204501.1
Synonym -
Functional annotation -
UniProt A0A1W0VY96
Pfam PF06376
Panther DB PTHR33374 PTHR33374:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46330 : arabinogalactan protein 16
RAP-DB (Rice) LOC_Os01g40880.1 : hypothetical protein
MaizeGDB (Corn) Zm00025a038435
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G008800 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
2 Sobic.002G013000 DUF538 domain containing protein, putative, expressed -
3 Sobic.002G088900 DUF538 domain containing protein, putative, expressed -
4 Sobic.002G089100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
5 Sobic.006G246600 DUF538 domain containing protein, putative, expressed -
6 Sobic.007G109900 bZIP transcription factor domain containing protein, expressed -
7 Sobic.001G316400 heavy metal-associated domain containing protein, expressed -
8 Sobic.002G122800 expressed protein -
9 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
10 Sobic.003G188100 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.002G087800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
12 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
13 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
14 Sobic.003G149200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
15 Sobic.003G111300 PIII1 - Proteinase inhibitor II family protein precursor, expressed -
16 Sobic.008G074400 glutathione S-transferase, putative, expressed K01800: maiA, maleylacetoacetate isomerase
17 Sobic.005G024900 major facilitator superfamily antiporter, putative, expressed -
18 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
19 Sobic.005G169400 WIP5 - Wound-induced protein precursor, expressed -
20 Sobic.004G008900 Sphingoid base hydroxylase 2 SBH2 (At)(PubMedID : 27208977)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase


Gene co-expression network
sample Sobic003G204501 Sobic003G204501 Sobic004G008800 Sobic004G008800 Sobic003G204501--Sobic004G008800 Sobic002G013000 Sobic002G013000 Sobic003G204501--Sobic002G013000 Sobic002G088900 Sobic002G088900 Sobic003G204501--Sobic002G088900 Sobic002G089100 Sobic002G089100 Sobic003G204501--Sobic002G089100 Sobic006G246600 Sobic006G246600 Sobic003G204501--Sobic006G246600 Sobic007G109900 Sobic007G109900 Sobic003G204501--Sobic007G109900 Sobic001G316400 Sobic001G316400 Sobic003G204501--Sobic001G316400 Sobic002G122800 Sobic002G122800 Sobic003G204501--Sobic002G122800 Sobic009G114000 Sobic009G114000 Sobic003G204501--Sobic009G114000 Sobic004G008800--Sobic002G089100 Sobic004G008800--Sobic003G204501 Sobic004G008800--Sobic002G088900 Sobic004G008800--Sobic002G013000 Sobic003G111300 Sobic003G111300 Sobic004G008800--Sobic003G111300 Sobic004G008800--Sobic007G109900 Sobic004G008800--Sobic006G246600 Sobic004G008800--Sobic001G316400 Sobic004G008800--Sobic002G122800 Sobic002G013000--Sobic002G089100 Sobic002G013000--Sobic002G088900 Sobic002G013000--Sobic003G204501 Sobic002G013000--Sobic006G246600 Sobic002G013000--Sobic004G008800 Sobic010G126900 Sobic010G126900 Sobic002G013000--Sobic010G126900 Sobic003G188100 Sobic003G188100 Sobic002G013000--Sobic003G188100 Sobic002G013000--Sobic001G316400 Sobic003G080900 Sobic003G080900 Sobic002G013000--Sobic003G080900 Sobic002G088900--Sobic002G013000 Sobic002G088900--Sobic002G089100 Sobic002G088900--Sobic003G204501 Sobic002G088900--Sobic004G008800 Sobic002G088900--Sobic006G246600 Sobic004G106900 Sobic004G106900 Sobic002G088900--Sobic004G106900 Sobic005G043900 Sobic005G043900 Sobic002G088900--Sobic005G043900 Sobic003G149200 Sobic003G149200 Sobic002G088900--Sobic003G149200 Sobic002G085300 Sobic002G085300 Sobic002G088900--Sobic002G085300 Sobic002G089100--Sobic002G013000 Sobic002G089100--Sobic004G008800 Sobic002G089100--Sobic002G088900 Sobic002G089100--Sobic006G246600 Sobic002G089100--Sobic003G204501 Sobic002G089100--Sobic005G043900 Sobic002G089100--Sobic001G316400 Sobic003G203200 Sobic003G203200 Sobic002G089100--Sobic003G203200 Sobic002G089100--Sobic003G188100 Sobic006G246600--Sobic002G013000 Sobic006G246600--Sobic002G089100 Sobic006G246600--Sobic005G043900 Sobic006G246600--Sobic003G204501 Sobic006G246600--Sobic003G203200 Sobic006G246600--Sobic002G088900 Sobic006G246600--Sobic001G316400 Sobic001G354400 Sobic001G354400 Sobic006G246600--Sobic001G354400 Sobic008G048900 Sobic008G048900 Sobic006G246600--Sobic008G048900 Sobic007G109900--Sobic003G204501 Sobic007G109900--Sobic004G008800 Sobic002G087800 Sobic002G087800 Sobic007G109900--Sobic002G087800 Sobic005G169400 Sobic005G169400 Sobic007G109900--Sobic005G169400 Sobic007G128600 Sobic007G128600 Sobic007G109900--Sobic007G128600 Sobic006G244400 Sobic006G244400 Sobic007G109900--Sobic006G244400 Sobic003G428400 Sobic003G428400 Sobic007G109900--Sobic003G428400 Sobic005G024900 Sobic005G024900 Sobic007G109900--Sobic005G024900 Sobic001G322700 Sobic001G322700 Sobic007G109900--Sobic001G322700 Sobic001G316400--Sobic003G203200 Sobic001G316400--Sobic002G122800 Sobic008G074400 Sobic008G074400 Sobic001G316400--Sobic008G074400 Sobic006G181300 Sobic006G181300 Sobic001G316400--Sobic006G181300 Sobic001G504900 Sobic001G504900 Sobic001G316400--Sobic001G504900 Sobic001G316400--Sobic002G085300 Sobic001G316400--Sobic009G114000 Sobic006G091700 Sobic006G091700 Sobic001G316400--Sobic006G091700 Sobic001G316400--Sobic001G354400 Sobic002G122800--Sobic009G114000 Sobic003G111200 Sobic003G111200 Sobic002G122800--Sobic003G111200 Sobic002G122800--Sobic003G203200 Sobic002G122800--Sobic005G169400 Sobic002G122800--Sobic001G316400 Sobic002G122800--Sobic001G354400 Sobic002G122800--Sobic006G181300 Sobic002G122800--Sobic006G091700 Sobic002G122800--Sobic002G085300 Sobic009G114000--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic009G114000--Sobic003G087200 Sobic006G226400 Sobic006G226400 Sobic009G114000--Sobic006G226400 Sobic009G114000--Sobic006G181300 Sobic009G114000--Sobic002G085300 Sobic001G150600 Sobic001G150600 Sobic009G114000--Sobic001G150600 Sobic001G069900 Sobic001G069900 Sobic009G114000--Sobic001G069900 Sobic009G114000--Sobic002G122800 Sobic006G030700 Sobic006G030700 Sobic009G114000--Sobic006G030700
Octagon: transcription factors


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