Gene annotation
Transcriptome id Sobic.004G008900.1
Synonym SBH1, Sb04g000940
Functional annotation Sphingoid base hydroxylase 2 SBH2 (At) (PubMedID : 27208977)
sphingolipid C4-hydroxylase SUR2, putative, expressed
UniProt C5XS75
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF52
NCBI CDD KOG0874; Sphingolipid hydroxylase
KEGG Orthology K04713; sphinganine C4-monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G14290 : sphingoid base hydroxylase 2
RAP-DB (Rice) LOC_Os06g22490.1 : sphingolipid C4-hydroxylase SUR2, putative, expressed
MaizeGDB (Corn) Zm00025a029755 , Zm00025a044154 , Zm00025a044153
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G117500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
2 Sobic.003G204400 hypothetical protein -
3 Sobic.004G008300 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
4 Sobic.003G204300 expressed protein -
5 Sobic.010G126900 lectin-like receptor kinase, putative, expressed -
6 Sobic.003G097400 - -
7 Sobic.009G076300 expressed protein -
8 Sobic.005G216200 O-methyltransferase, putative, expressed -
9 Sobic.010G126800 lectin-like receptor kinase 7, putative, expressed -
10 Sobic.007G063900 - -
11 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
12 Sobic.004G121800 expansin precursor, putative, expressed -
13 Sobic.009G004950 - -
14 Sobic.010G245400 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.002G013000 DUF538 domain containing protein, putative, expressed -
16 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
17 Sobic.005G075600 rp3 protein, putative, expressed -
18 Sobic.009G177000 transmembrane protein 56, putative, expressed -
19 Sobic.004G153100 disease resistance protein, putative, expressed -
20 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic004G008900 Sobic004G008900 Sobic010G117500 Sobic010G117500 Sobic004G008900--Sobic010G117500 Sobic003G204400 Sobic003G204400 Sobic004G008900--Sobic003G204400 Sobic004G008300 Sobic004G008300 Sobic004G008900--Sobic004G008300 Sobic003G204300 Sobic003G204300 Sobic004G008900--Sobic003G204300 Sobic010G126900 Sobic010G126900 Sobic004G008900--Sobic010G126900 Sobic003G097400 Sobic003G097400 Sobic004G008900--Sobic003G097400 Sobic009G076300 Sobic009G076300 Sobic004G008900--Sobic009G076300 Sobic005G216200 Sobic005G216200 Sobic004G008900--Sobic005G216200 Sobic010G126800 Sobic010G126800 Sobic004G008900--Sobic010G126800 Sobic010G117500--Sobic003G204400 Sobic010G117500--Sobic004G008300 Sobic010G117500--Sobic004G008900 Sobic010G117500--Sobic003G204300 Sobic010G117500--Sobic009G076300 Sobic010G117800 Sobic010G117800 Sobic010G117500--Sobic010G117800 Sobic010G117500--Sobic005G216200 Sobic006G168100 Sobic006G168100 Sobic010G117500--Sobic006G168100 Sobic010G117500--Sobic003G097400 Sobic003G204400--Sobic010G117500 Sobic003G204400--Sobic004G008300 Sobic003G204400--Sobic009G076300 Sobic003G204400--Sobic010G126800 Sobic003G204400--Sobic003G204300 Sobic003G441700 Sobic003G441700 Sobic003G204400--Sobic003G441700 Sobic004G121800 Sobic004G121800 Sobic003G204400--Sobic004G121800 Sobic005G216400 Sobic005G216400 Sobic003G204400--Sobic005G216400 Sobic003G204400--Sobic004G008900 Sobic004G008300--Sobic003G204300 Sobic005G066200 Sobic005G066200 Sobic004G008300--Sobic005G066200 Sobic009G004950 Sobic009G004950 Sobic004G008300--Sobic009G004950 Sobic004G008300--Sobic003G204400 Sobic004G008300--Sobic009G076300 Sobic004G008300--Sobic010G126800 Sobic009G177000 Sobic009G177000 Sobic004G008300--Sobic009G177000 Sobic004G008300--Sobic010G117500 Sobic007G119750 Sobic007G119750 Sobic004G008300--Sobic007G119750 Sobic003G204300--Sobic004G008300 Sobic003G204300--Sobic009G004950 Sobic002G009100 Sobic002G009100 Sobic003G204300--Sobic002G009100 Sobic005G075600 Sobic005G075600 Sobic010G126900--Sobic005G075600 Sobic010G126900--Sobic004G008900 Sobic002G013000 Sobic002G013000 Sobic010G126900--Sobic002G013000 Sobic001G326400 Sobic001G326400 Sobic010G126900--Sobic001G326400 Sobic010G126900--Sobic003G204400 Sobic010G126900--Sobic010G126800 Sobic003G020500 Sobic003G020500 Sobic010G126900--Sobic003G020500 Sobic001G218500 Sobic001G218500 Sobic010G126900--Sobic001G218500 Sobic002G193900 Sobic002G193900 Sobic010G126900--Sobic002G193900 Sobic003G097400--Sobic004G008300 Sobic003G097400--Sobic010G117500 Sobic003G097400--Sobic009G177000 Sobic003G097400--Sobic004G008900 Sobic003G097400--Sobic003G204400 Sobic005G110514 Sobic005G110514 Sobic003G097400--Sobic005G110514 Sobic002G196000 Sobic002G196000 Sobic003G097400--Sobic002G196000 Sobic005G131200 Sobic005G131200 Sobic003G097400--Sobic005G131200 Sobic001G482000 Sobic001G482000 Sobic003G097400--Sobic001G482000 Sobic009G076300--Sobic004G008300 Sobic009G076300--Sobic003G204300 Sobic009G076300--Sobic003G204400 Sobic009G076300--Sobic009G004950 Sobic007G066508 Sobic007G066508 Sobic009G076300--Sobic007G066508 Sobic005G220300 Sobic005G220300 Sobic009G076300--Sobic005G220300 Sobic009G076300--Sobic002G009100 Sobic005G216200--Sobic010G117800 Sobic010G117600 Sobic010G117600 Sobic005G216200--Sobic010G117600 Sobic005G216200--Sobic010G117500 Sobic010G117300 Sobic010G117300 Sobic005G216200--Sobic010G117300 Sobic006G255400 Sobic006G255400 Sobic005G216200--Sobic006G255400 Sobic005G216200--Sobic004G008900 Sobic007G158600 Sobic007G158600 Sobic005G216200--Sobic007G158600 Sobic002G391800 Sobic002G391800 Sobic005G216200--Sobic002G391800 Sobic001G234900 Sobic001G234900 Sobic005G216200--Sobic001G234900 Sobic010G126800--Sobic007G119750 Sobic010G126800--Sobic005G066200 Sobic010G126800--Sobic009G004950 Sobic002G019000 Sobic002G019000 Sobic010G126800--Sobic002G019000 Sobic003G161400 Sobic003G161400 Sobic010G126800--Sobic003G161400 Sobic010G242800 Sobic010G242800 Sobic010G126800--Sobic010G242800 Sobic002G063700 Sobic002G063700 Sobic010G126800--Sobic002G063700 Sobic005G197350 Sobic005G197350 Sobic010G126800--Sobic005G197350 Sobic008G105800 Sobic008G105800 Sobic010G126800--Sobic008G105800
Octagon: transcription factors


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