Gene annotation
Transcriptome id Sobic.004G008300.1
Synonym SBH1, Sb04g000900
Functional annotation sphingolipid C4-hydroxylase SUR2, putative, expressed
UniProt C5XS71
Pfam PF04116
Panther DB PTHR11863 PTHR11863:SF52
NCBI CDD KOG0874; Sphingolipid hydroxylase
KEGG Orthology K04713; sphinganine C4-monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G14290 : sphingoid base hydroxylase 2
RAP-DB (Rice) LOC_Os06g22490.1 : sphingolipid C4-hydroxylase SUR2, putative, expressed
MaizeGDB (Corn) Zm00025a029755 , Zm00025a044154 , Zm00025a044153
Brachypodium KQK09021
Barley HORVU3Hr1G059300.1 , HORVU3Hr1G059300.2
Wheat TraesCS3A02G238600 , TraesCS3D02G239000 , TraesCS3B02G267100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G204300 expressed protein -
2 Sobic.005G066200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
3 Sobic.009G004950 - -
4 Sobic.003G204400 hypothetical protein -
5 Sobic.009G076300 expressed protein -
6 Sobic.010G126800 lectin-like receptor kinase 7, putative, expressed -
7 Sobic.009G177000 transmembrane protein 56, putative, expressed -
8 Sobic.010G117500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
9 Sobic.007G119750 - -
10 Sobic.002G258900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin responsive protein, putative, expressed K14488: SAUR family protein
11 Sobic.004G121800 expansin precursor, putative, expressed -
12 Sobic.002G009100 expressed protein -
13 Sobic.002G009100 expressed protein -
14 Sobic.002G009100 expressed protein -
15 Sobic.002G009100 expressed protein -
16 Sobic.002G009100 expressed protein -
17 Sobic.002G009100 expressed protein -
18 Sobic.002G009100 expressed protein -
19 Sobic.002G009100 expressed protein -
20 Sobic.002G009100 expressed protein -


Gene co-expression network
sample Sobic004G008300 Sobic004G008300 Sobic003G204300 Sobic003G204300 Sobic004G008300--Sobic003G204300 Sobic005G066200 Sobic005G066200 Sobic004G008300--Sobic005G066200 Sobic009G004950 Sobic009G004950 Sobic004G008300--Sobic009G004950 Sobic003G204400 Sobic003G204400 Sobic004G008300--Sobic003G204400 Sobic009G076300 Sobic009G076300 Sobic004G008300--Sobic009G076300 Sobic010G126800 Sobic010G126800 Sobic004G008300--Sobic010G126800 Sobic009G177000 Sobic009G177000 Sobic004G008300--Sobic009G177000 Sobic010G117500 Sobic010G117500 Sobic004G008300--Sobic010G117500 Sobic007G119750 Sobic007G119750 Sobic004G008300--Sobic007G119750 Sobic003G204300--Sobic004G008300 Sobic003G204300--Sobic009G004950 Sobic002G009100 Sobic002G009100 Sobic003G204300--Sobic002G009100 Sobic005G066200--Sobic007G119750 Sobic005G197350 Sobic005G197350 Sobic005G066200--Sobic005G197350 Sobic005G066200--Sobic010G126800 Sobic005G066366 Sobic005G066366 Sobic005G066200--Sobic005G066366 Sobic005G066200--Sobic004G008300 Sobic005G066200--Sobic009G004950 Sobic005G066500 Sobic005G066500 Sobic005G066200--Sobic005G066500 Sobic002G019000 Sobic002G019000 Sobic005G066200--Sobic002G019000 Sobic010G242800 Sobic010G242800 Sobic005G066200--Sobic010G242800 Sobic009G004950--Sobic010G126800 Sobic009G004950--Sobic003G204300 Sobic009G004950--Sobic005G066200 Sobic002G409200 Sobic002G409200 Sobic009G004950--Sobic002G409200 Sobic009G004950--Sobic004G008300 Sobic009G004950--Sobic007G119750 Sobic002G063700 Sobic002G063700 Sobic009G004950--Sobic002G063700 Sobic005G069332 Sobic005G069332 Sobic009G004950--Sobic005G069332 Sobic008G105800 Sobic008G105800 Sobic009G004950--Sobic008G105800 Sobic003G204400--Sobic010G117500 Sobic003G204400--Sobic004G008300 Sobic003G204400--Sobic009G076300 Sobic003G204400--Sobic010G126800 Sobic003G204400--Sobic003G204300 Sobic003G441700 Sobic003G441700 Sobic003G204400--Sobic003G441700 Sobic004G121800 Sobic004G121800 Sobic003G204400--Sobic004G121800 Sobic005G216400 Sobic005G216400 Sobic003G204400--Sobic005G216400 Sobic004G008900 Sobic004G008900 Sobic003G204400--Sobic004G008900 Sobic009G076300--Sobic004G008300 Sobic009G076300--Sobic003G204300 Sobic009G076300--Sobic003G204400 Sobic009G076300--Sobic009G004950 Sobic007G066508 Sobic007G066508 Sobic009G076300--Sobic007G066508 Sobic005G220300 Sobic005G220300 Sobic009G076300--Sobic005G220300 Sobic009G076300--Sobic002G009100 Sobic010G126800--Sobic007G119750 Sobic010G126800--Sobic005G066200 Sobic010G126800--Sobic009G004950 Sobic010G126800--Sobic002G019000 Sobic003G161400 Sobic003G161400 Sobic010G126800--Sobic003G161400 Sobic010G126800--Sobic010G242800 Sobic010G126800--Sobic002G063700 Sobic010G126800--Sobic005G197350 Sobic010G126800--Sobic008G105800 Sobic009G177000--Sobic005G066200 Sobic009G177000--Sobic004G008300 Sobic009G177000--Sobic010G126800 Sobic009G177000--Sobic005G197350 Sobic009G177000--Sobic003G204300 Sobic009G177000--Sobic007G119750 Sobic009G177000--Sobic003G204400 Sobic009G177000--Sobic009G076300 Sobic009G177000--Sobic005G066366 Sobic010G117500--Sobic003G204400 Sobic010G117500--Sobic004G008300 Sobic010G117500--Sobic004G008900 Sobic010G117500--Sobic003G204300 Sobic010G117500--Sobic009G076300 Sobic010G117800 Sobic010G117800 Sobic010G117500--Sobic010G117800 Sobic005G216200 Sobic005G216200 Sobic010G117500--Sobic005G216200 Sobic006G168100 Sobic006G168100 Sobic010G117500--Sobic006G168100 Sobic003G097400 Sobic003G097400 Sobic010G117500--Sobic003G097400 Sobic007G119750--Sobic005G066200 Sobic007G119750--Sobic005G197350 Sobic007G119750--Sobic005G066500 Sobic007G119750--Sobic002G019000 Sobic007G119750--Sobic010G126800 Sobic005G065700 Sobic005G065700 Sobic007G119750--Sobic005G065700 Sobic007G119750--Sobic010G242800 Sobic007G064900 Sobic007G064900 Sobic007G119750--Sobic007G064900 Sobic005G110511 Sobic005G110511 Sobic007G119750--Sobic005G110511
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.