Gene annotation
Transcriptome id Sobic.009G177000.1,Sobic.009G177000.2
Synonym Sb09g023740
Functional annotation transmembrane protein 56, putative, expressed
UniProt A0A1Z5R443 , C5YZV8
Pfam PF03798
Panther DB PTHR13439 PTHR13439:SF14 PTHR13439:SF14 PTHR13439
NCBI CDD KOG4561; Uncharacterized conserved protein, contains TBC domain
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G10360 : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
RAP-DB (Rice) LOC_Os05g40700.1 : transmembrane protein 56, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G066200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
2 Sobic.004G008300 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
3 Sobic.010G126800 lectin-like receptor kinase 7, putative, expressed -
4 Sobic.005G197350 - -
5 Sobic.003G204300 expressed protein -
6 Sobic.007G119750 - -
7 Sobic.003G204400 hypothetical protein -
8 Sobic.009G076300 expressed protein -
9 Sobic.005G066366 - -
10 Sobic.001G482000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
11 Sobic.002G258900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin responsive protein, putative, expressed K14488: SAUR family protein
12 Sobic.009G004950 - -
13 Sobic.005G131200 - -
14 Sobic.002G081850 - -
15 Sobic.010G242800 disease resistance protein RGA3, putative, expressed -
16 Sobic.002G178000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
17 Sobic.003G161400 powdery mildew resistance protein PM3A, putative, expressed -
18 Sobic.005G216600 plant protein of unknown function domain containing protein, expressed -
19 Sobic.002G019000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
20 Sobic.007G066508 - -


Gene co-expression network
sample Sobic009G177000 Sobic009G177000 Sobic005G066200 Sobic005G066200 Sobic009G177000--Sobic005G066200 Sobic004G008300 Sobic004G008300 Sobic009G177000--Sobic004G008300 Sobic010G126800 Sobic010G126800 Sobic009G177000--Sobic010G126800 Sobic005G197350 Sobic005G197350 Sobic009G177000--Sobic005G197350 Sobic003G204300 Sobic003G204300 Sobic009G177000--Sobic003G204300 Sobic007G119750 Sobic007G119750 Sobic009G177000--Sobic007G119750 Sobic003G204400 Sobic003G204400 Sobic009G177000--Sobic003G204400 Sobic009G076300 Sobic009G076300 Sobic009G177000--Sobic009G076300 Sobic005G066366 Sobic005G066366 Sobic009G177000--Sobic005G066366 Sobic005G066200--Sobic007G119750 Sobic005G066200--Sobic005G197350 Sobic005G066200--Sobic010G126800 Sobic005G066200--Sobic005G066366 Sobic005G066200--Sobic004G008300 Sobic009G004950 Sobic009G004950 Sobic005G066200--Sobic009G004950 Sobic005G066500 Sobic005G066500 Sobic005G066200--Sobic005G066500 Sobic002G019000 Sobic002G019000 Sobic005G066200--Sobic002G019000 Sobic010G242800 Sobic010G242800 Sobic005G066200--Sobic010G242800 Sobic004G008300--Sobic003G204300 Sobic004G008300--Sobic005G066200 Sobic004G008300--Sobic009G004950 Sobic004G008300--Sobic003G204400 Sobic004G008300--Sobic009G076300 Sobic004G008300--Sobic010G126800 Sobic004G008300--Sobic009G177000 Sobic010G117500 Sobic010G117500 Sobic004G008300--Sobic010G117500 Sobic004G008300--Sobic007G119750 Sobic010G126800--Sobic007G119750 Sobic010G126800--Sobic005G066200 Sobic010G126800--Sobic009G004950 Sobic010G126800--Sobic002G019000 Sobic003G161400 Sobic003G161400 Sobic010G126800--Sobic003G161400 Sobic010G126800--Sobic010G242800 Sobic002G063700 Sobic002G063700 Sobic010G126800--Sobic002G063700 Sobic010G126800--Sobic005G197350 Sobic008G105800 Sobic008G105800 Sobic010G126800--Sobic008G105800 Sobic005G197350--Sobic005G066366 Sobic005G197350--Sobic005G066500 Sobic005G197350--Sobic005G066200 Sobic002G081850 Sobic002G081850 Sobic005G197350--Sobic002G081850 Sobic005G110511 Sobic005G110511 Sobic005G197350--Sobic005G110511 Sobic005G197350--Sobic007G119750 Sobic005G197350--Sobic002G019000 Sobic005G197350--Sobic010G242800 Sobic005G065700 Sobic005G065700 Sobic005G197350--Sobic005G065700 Sobic003G204300--Sobic004G008300 Sobic003G204300--Sobic009G004950 Sobic002G009100 Sobic002G009100 Sobic003G204300--Sobic002G009100 Sobic007G119750--Sobic005G066200 Sobic007G119750--Sobic005G197350 Sobic007G119750--Sobic005G066500 Sobic007G119750--Sobic002G019000 Sobic007G119750--Sobic010G126800 Sobic007G119750--Sobic005G065700 Sobic007G119750--Sobic010G242800 Sobic007G064900 Sobic007G064900 Sobic007G119750--Sobic007G064900 Sobic007G119750--Sobic005G110511 Sobic003G204400--Sobic010G117500 Sobic003G204400--Sobic004G008300 Sobic003G204400--Sobic009G076300 Sobic003G204400--Sobic010G126800 Sobic003G204400--Sobic003G204300 Sobic003G441700 Sobic003G441700 Sobic003G204400--Sobic003G441700 Sobic004G121800 Sobic004G121800 Sobic003G204400--Sobic004G121800 Sobic005G216400 Sobic005G216400 Sobic003G204400--Sobic005G216400 Sobic004G008900 Sobic004G008900 Sobic003G204400--Sobic004G008900 Sobic009G076300--Sobic004G008300 Sobic009G076300--Sobic003G204300 Sobic009G076300--Sobic003G204400 Sobic009G076300--Sobic009G004950 Sobic007G066508 Sobic007G066508 Sobic009G076300--Sobic007G066508 Sobic005G220300 Sobic005G220300 Sobic009G076300--Sobic005G220300 Sobic009G076300--Sobic002G009100 Sobic005G066366--Sobic010G242800 Sobic005G066366--Sobic005G110511 Sobic005G066366--Sobic005G197350 Sobic005G197400 Sobic005G197400 Sobic005G066366--Sobic005G197400 Sobic008G033100 Sobic008G033100 Sobic005G066366--Sobic008G033100 Sobic005G197500 Sobic005G197500 Sobic005G066366--Sobic005G197500 Sobic005G182900 Sobic005G182900 Sobic005G066366--Sobic005G182900 Sobic005G066366--Sobic005G066500 Sobic005G066366--Sobic003G161400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.