Gene annotation
Transcriptome id Sobic.010G117500.1
Synonym Sb10g010390
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
DUF538 domain containing protein, putative, expressed
UniProt C5Z8L7
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09310 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os07g02850.1 : DUF538 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009479 , Zm00025a044909 , Zm00025a009480 , Zm00025a044910
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G204400 hypothetical protein -
2 Sobic.004G008300 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
3 Sobic.004G008900 Sphingoid base hydroxylase 2 SBH2 (At)(PubMedID : 27208977)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
4 Sobic.003G204300 expressed protein -
5 Sobic.009G076300 expressed protein -
6 Sobic.010G117800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
7 Sobic.005G216200 O-methyltransferase, putative, expressed -
8 Sobic.006G168100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
9 Sobic.003G097400 - -
10 Sobic.001G299100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
11 Sobic.004G121800 expansin precursor, putative, expressed -
12 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
13 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
15 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.010G126800 lectin-like receptor kinase 7, putative, expressed -
17 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
18 Sobic.009G177000 transmembrane protein 56, putative, expressed -
19 Sobic.009G004950 - -
20 Sobic.008G033700 pleiotropic drug resistance protein 15, putative, expressed -


Gene co-expression network
sample Sobic010G117500 Sobic010G117500 Sobic003G204400 Sobic003G204400 Sobic010G117500--Sobic003G204400 Sobic004G008300 Sobic004G008300 Sobic010G117500--Sobic004G008300 Sobic004G008900 Sobic004G008900 Sobic010G117500--Sobic004G008900 Sobic003G204300 Sobic003G204300 Sobic010G117500--Sobic003G204300 Sobic009G076300 Sobic009G076300 Sobic010G117500--Sobic009G076300 Sobic010G117800 Sobic010G117800 Sobic010G117500--Sobic010G117800 Sobic005G216200 Sobic005G216200 Sobic010G117500--Sobic005G216200 Sobic006G168100 Sobic006G168100 Sobic010G117500--Sobic006G168100 Sobic003G097400 Sobic003G097400 Sobic010G117500--Sobic003G097400 Sobic003G204400--Sobic010G117500 Sobic003G204400--Sobic004G008300 Sobic003G204400--Sobic009G076300 Sobic010G126800 Sobic010G126800 Sobic003G204400--Sobic010G126800 Sobic003G204400--Sobic003G204300 Sobic003G441700 Sobic003G441700 Sobic003G204400--Sobic003G441700 Sobic004G121800 Sobic004G121800 Sobic003G204400--Sobic004G121800 Sobic005G216400 Sobic005G216400 Sobic003G204400--Sobic005G216400 Sobic003G204400--Sobic004G008900 Sobic004G008300--Sobic003G204300 Sobic005G066200 Sobic005G066200 Sobic004G008300--Sobic005G066200 Sobic009G004950 Sobic009G004950 Sobic004G008300--Sobic009G004950 Sobic004G008300--Sobic003G204400 Sobic004G008300--Sobic009G076300 Sobic004G008300--Sobic010G126800 Sobic009G177000 Sobic009G177000 Sobic004G008300--Sobic009G177000 Sobic004G008300--Sobic010G117500 Sobic007G119750 Sobic007G119750 Sobic004G008300--Sobic007G119750 Sobic004G008900--Sobic010G117500 Sobic004G008900--Sobic003G204400 Sobic004G008900--Sobic004G008300 Sobic004G008900--Sobic003G204300 Sobic010G126900 Sobic010G126900 Sobic004G008900--Sobic010G126900 Sobic004G008900--Sobic003G097400 Sobic004G008900--Sobic009G076300 Sobic004G008900--Sobic005G216200 Sobic004G008900--Sobic010G126800 Sobic003G204300--Sobic004G008300 Sobic003G204300--Sobic009G004950 Sobic002G009100 Sobic002G009100 Sobic003G204300--Sobic002G009100 Sobic009G076300--Sobic004G008300 Sobic009G076300--Sobic003G204300 Sobic009G076300--Sobic003G204400 Sobic009G076300--Sobic009G004950 Sobic007G066508 Sobic007G066508 Sobic009G076300--Sobic007G066508 Sobic005G220300 Sobic005G220300 Sobic009G076300--Sobic005G220300 Sobic009G076300--Sobic002G009100 Sobic010G117600 Sobic010G117600 Sobic010G117800--Sobic010G117600 Sobic010G117800--Sobic005G216200 Sobic010G117300 Sobic010G117300 Sobic010G117800--Sobic010G117300 Sobic007G158600 Sobic007G158600 Sobic010G117800--Sobic007G158600 Sobic005G066100 Sobic005G066100 Sobic010G117800--Sobic005G066100 Sobic002G425000 Sobic002G425000 Sobic010G117800--Sobic002G425000 Sobic008G127933 Sobic008G127933 Sobic010G117800--Sobic008G127933 Sobic005G160700 Sobic005G160700 Sobic010G117800--Sobic005G160700 SobicK026900 SobicK026900 Sobic010G117800--SobicK026900 Sobic005G216200--Sobic010G117800 Sobic005G216200--Sobic010G117600 Sobic005G216200--Sobic010G117500 Sobic005G216200--Sobic010G117300 Sobic006G255400 Sobic006G255400 Sobic005G216200--Sobic006G255400 Sobic005G216200--Sobic004G008900 Sobic005G216200--Sobic007G158600 Sobic002G391800 Sobic002G391800 Sobic005G216200--Sobic002G391800 Sobic001G234900 Sobic001G234900 Sobic005G216200--Sobic001G234900 Sobic005G217766 Sobic005G217766 Sobic006G168100--Sobic005G217766 Sobic001G218400 Sobic001G218400 Sobic006G168100--Sobic001G218400 Sobic003G020500 Sobic003G020500 Sobic006G168100--Sobic003G020500 Sobic001G299100 Sobic001G299100 Sobic006G168100--Sobic001G299100 Sobic002G111900 Sobic002G111900 Sobic006G168100--Sobic002G111900 Sobic004G121600 Sobic004G121600 Sobic006G168100--Sobic004G121600 Sobic002G183750 Sobic002G183750 Sobic006G168100--Sobic002G183750 Sobic003G441601 Sobic003G441601 Sobic006G168100--Sobic003G441601 Sobic008G033700 Sobic008G033700 Sobic006G168100--Sobic008G033700 Sobic003G097400--Sobic004G008300 Sobic003G097400--Sobic010G117500 Sobic003G097400--Sobic009G177000 Sobic003G097400--Sobic004G008900 Sobic003G097400--Sobic003G204400 Sobic005G110514 Sobic005G110514 Sobic003G097400--Sobic005G110514 Sobic002G196000 Sobic002G196000 Sobic003G097400--Sobic002G196000 Sobic005G131200 Sobic005G131200 Sobic003G097400--Sobic005G131200 Sobic001G482000 Sobic001G482000 Sobic003G097400--Sobic001G482000
Octagon: transcription factors


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