Gene annotation
Transcriptome id Sobic.009G197700.2
Synonym Sb09g025543
Functional annotation expressed protein
UniProt A0A1Z5R3G3
Pfam -
Panther DB PTHR31704 PTHR31704:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g39530.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G136800 only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
2 Sobic.003G374150 - -
3 Sobic.004G006966 - -
4 Sobic.004G006966 - -
5 Sobic.004G006966 - -
6 Sobic.004G006966 - -
7 Sobic.004G006966 - -
8 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
9 Sobic.001G432550 - -
10 Sobic.010G016800 - -
11 Sobic.001G483500 DUF567 domain containing protein, putative, expressed -
12 Sobic.009G061300 - -
13 Sobic.003G360900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.002G182850 - -
15 Sobic.008G006500 zinc knuckle family protein, expressed -
16 Sobic.001G235500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
18 Sobic.001G101400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII4 - Proteinase inhibitor II family protein precursor, expressed -
19 Sobic.003G216000 pleiotropic drug resistance protein, putative, expressed -
20 Sobic.009G038501 - -


Gene co-expression network
sample Sobic009G197700 Sobic009G197700 Sobic005G136800 Sobic005G136800 Sobic009G197700--Sobic005G136800 Sobic003G374150 Sobic003G374150 Sobic009G197700--Sobic003G374150 Sobic004G006966 Sobic004G006966 Sobic009G197700--Sobic004G006966 Sobic001G251900 Sobic001G251900 Sobic009G197700--Sobic001G251900 Sobic001G432550 Sobic001G432550 Sobic009G197700--Sobic001G432550 Sobic005G136800--Sobic003G374150 Sobic005G136800--Sobic004G006966 Sobic005G136800--Sobic009G197700 Sobic010G016800 Sobic010G016800 Sobic005G136800--Sobic010G016800 Sobic001G483500 Sobic001G483500 Sobic005G136800--Sobic001G483500 Sobic003G374150--Sobic005G136800 Sobic003G374150--Sobic004G006966 Sobic003G374150--Sobic009G197700 Sobic003G374150--Sobic010G016800 Sobic003G374150--Sobic001G483500 Sobic004G006966--Sobic004G006966 Sobic004G006966--Sobic003G374150 Sobic004G006966--Sobic005G136800 Sobic004G006966--Sobic010G016800 Sobic004G006966--Sobic001G483500 Sobic002G182850 Sobic002G182850 Sobic004G006966--Sobic002G182850 Sobic001G251900--Sobic001G483500 Sobic003G219600 Sobic003G219600 Sobic001G251900--Sobic003G219600 Sobic001G251900--Sobic004G006966 Sobic006G100400 Sobic006G100400 Sobic001G251900--Sobic006G100400 Sobic005G151700 Sobic005G151700 Sobic001G251900--Sobic005G151700 Sobic001G432550--Sobic009G197700 Sobic001G235500 Sobic001G235500 Sobic001G432550--Sobic001G235500 Sobic001G432550--Sobic005G136800 Sobic003G360900 Sobic003G360900 Sobic001G432550--Sobic003G360900 Sobic001G432550--Sobic003G374150 Sobic009G038501 Sobic009G038501 Sobic001G432550--Sobic009G038501 Sobic006G146100 Sobic006G146100 Sobic001G432550--Sobic006G146100 Sobic009G118600 Sobic009G118600 Sobic001G432550--Sobic009G118600 Sobic009G136100 Sobic009G136100 Sobic001G432550--Sobic009G136100
Octagon: transcription factors


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