Gene annotation
Transcriptome id Sobic.001G432550.1
Synonym -
Functional annotation -
UniProt A0A1Z5SAE2
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G197700 expressed protein -
2 Sobic.001G235500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
3 Sobic.005G136800 only inducible by pathogen inoculation(PubMedID : 20529887)@"SbCHS2 encodes a typical CHS that synthesizes naringenin chalcone, which is necessary for the formation of different flavonoid metabolites."(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
4 Sobic.003G360900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytochrome P450, putative, expressed -
5 Sobic.003G374150 - -
6 Sobic.009G038501 - -
7 Sobic.006G146100 Os4bglu18 - monolignol beta-glucoside homologue, expressed K05350: beta-glucosidase
8 Sobic.009G118600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
9 Sobic.009G136100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@auxin-induced protein 5NG4, putative, expressed -
10 Sobic.001G251900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exonuclease, putative, expressed -
11 Sobic.004G006966 - -
12 Sobic.004G006966 - -
13 Sobic.004G006966 - -
14 Sobic.004G006966 - -
15 Sobic.004G006966 - -
16 Sobic.004G236000 laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
18 Sobic.004G236600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBK10 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.004G200800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@enzyme relate to secondary metabolic pathway(PubMedID : 25346182)@The B-phenyl ring of naringenin can be hydroxylated at the 3' positions to produce eriodictyol(PubMedID : 16943219)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase
20 Sobic.009G236300 lectin-like receptor kinase, putative, expressed -


Gene co-expression network
sample Sobic001G432550 Sobic001G432550 Sobic009G197700 Sobic009G197700 Sobic001G432550--Sobic009G197700 Sobic001G235500 Sobic001G235500 Sobic001G432550--Sobic001G235500 Sobic005G136800 Sobic005G136800 Sobic001G432550--Sobic005G136800 Sobic003G360900 Sobic003G360900 Sobic001G432550--Sobic003G360900 Sobic003G374150 Sobic003G374150 Sobic001G432550--Sobic003G374150 Sobic009G038501 Sobic009G038501 Sobic001G432550--Sobic009G038501 Sobic006G146100 Sobic006G146100 Sobic001G432550--Sobic006G146100 Sobic009G118600 Sobic009G118600 Sobic001G432550--Sobic009G118600 Sobic009G136100 Sobic009G136100 Sobic001G432550--Sobic009G136100 Sobic009G197700--Sobic005G136800 Sobic009G197700--Sobic003G374150 Sobic004G006966 Sobic004G006966 Sobic009G197700--Sobic004G006966 Sobic001G251900 Sobic001G251900 Sobic009G197700--Sobic001G251900 Sobic009G197700--Sobic001G432550 Sobic001G235500--Sobic009G136100 Sobic001G235500--Sobic009G118600 Sobic005G215766 Sobic005G215766 Sobic001G235500--Sobic005G215766 Sobic006G115300 Sobic006G115300 Sobic001G235500--Sobic006G115300 Sobic004G200800 Sobic004G200800 Sobic001G235500--Sobic004G200800 Sobic009G236300 Sobic009G236300 Sobic001G235500--Sobic009G236300 Sobic001G235500--Sobic006G146100 Sobic006G086100 Sobic006G086100 Sobic001G235500--Sobic006G086100 Sobic009G097300 Sobic009G097300 Sobic001G235500--Sobic009G097300 Sobic005G136800--Sobic003G374150 Sobic005G136800--Sobic004G006966 Sobic005G136800--Sobic009G197700 Sobic010G016800 Sobic010G016800 Sobic005G136800--Sobic010G016800 Sobic001G483500 Sobic001G483500 Sobic005G136800--Sobic001G483500 Sobic003G360900--Sobic009G038501 Sobic003G360900--Sobic009G197700 Sobic003G360900--Sobic001G251900 Sobic010G148501 Sobic010G148501 Sobic003G360900--Sobic010G148501 Sobic001G212000 Sobic001G212000 Sobic003G360900--Sobic001G212000 Sobic008G144500 Sobic008G144500 Sobic003G360900--Sobic008G144500 Sobic003G348400 Sobic003G348400 Sobic003G360900--Sobic003G348400 Sobic004G236600 Sobic004G236600 Sobic003G360900--Sobic004G236600 Sobic010G043400 Sobic010G043400 Sobic003G360900--Sobic010G043400 Sobic003G374150--Sobic005G136800 Sobic003G374150--Sobic004G006966 Sobic003G374150--Sobic009G197700 Sobic003G374150--Sobic010G016800 Sobic003G374150--Sobic001G483500 Sobic009G038501--Sobic008G144500 Sobic009G038501--Sobic004G236600 Sobic004G236000 Sobic004G236000 Sobic009G038501--Sobic004G236000 Sobic009G038501--Sobic003G360900 Sobic009G038501--Sobic001G251900 Sobic005G152100 Sobic005G152100 Sobic009G038501--Sobic005G152100 Sobic009G038501--Sobic001G212000 Sobic007G178100 Sobic007G178100 Sobic009G038501--Sobic007G178100 Sobic009G236200 Sobic009G236200 Sobic009G038501--Sobic009G236200 Sobic006G146100--Sobic001G235500 Sobic001G092000 Sobic001G092000 Sobic006G146100--Sobic001G092000 Sobic006G146100--Sobic009G038501 Sobic001G217400 Sobic001G217400 Sobic006G146100--Sobic001G217400 Sobic006G146100--Sobic005G215766 Sobic003G059300 Sobic003G059300 Sobic006G146100--Sobic003G059300 Sobic006G146100--Sobic008G144500 Sobic006G146100--Sobic009G197700 Sobic006G146100--Sobic003G360900 Sobic009G118600--Sobic001G235500 Sobic009G118600--Sobic006G115300 Sobic003G269800 Sobic003G269800 Sobic009G118600--Sobic003G269800 Sobic009G118600--Sobic009G136100 Sobic009G118600--Sobic006G086100 Sobic004G236550 Sobic004G236550 Sobic009G118600--Sobic004G236550 Sobic009G118600--Sobic005G215766 Sobic009G118600--Sobic009G097300 Sobic003G332000 Sobic003G332000 Sobic009G118600--Sobic003G332000 Sobic009G136100--Sobic001G235500 Sobic009G136100--Sobic009G118600 Sobic009G136100--Sobic004G236550 Sobic009G079300 Sobic009G079300 Sobic009G136100--Sobic009G079300 Sobic003G252400 Sobic003G252400 Sobic009G136100--Sobic003G252400 Sobic009G200300 Sobic009G200300 Sobic009G136100--Sobic009G200300 Sobic001G005700 Sobic001G005700 Sobic009G136100--Sobic001G005700 Sobic004G211301 Sobic004G211301 Sobic009G136100--Sobic004G211301 Sobic009G136100--Sobic006G115300
Octagon: transcription factors


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