Gene annotation
Transcriptome id Sobic.006G146200.1
Synonym Sb06g022510, BGLU46
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
Os4bglu18 - monolignol beta-glucoside homologue, expressed
UniProt A0A1B6PM07
Pfam PF00232
Panther DB PTHR10353 PTHR10353:SF27
NCBI CDD -
KEGG Orthology K05350; beta-glucosidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G61820 : beta glucosidase 46
RAP-DB (Rice) LOC_Os04g43410.1 : Os4bglu18 - monolignol beta-glucoside homologue, expressed
MaizeGDB (Corn) Zm00025a056497
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G146200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G417600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
2 Sobic.007G126000 - -
3 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
4 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
5 Sobic.005G083280 - -
6 Sobic.004G322901 - -
7 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
8 Sobic.006G018751 - -
9 Sobic.005G033400 heavy-metal-associated domain-containing protein, putative, expressed -
10 Sobic.001G261529 - -
11 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
12 Sobic.010G207900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
13 Sobic.007G086701 - -
14 Sobic.002G286800 MATE efflux protein, putative, expressed -
15 Sobic.007G204600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Alpha amylase, catalytic domain containing protein, expressed K01214: ISA, isoamylase
16 Sobic.003G092600 seven in absentia protein family protein, expressed -
17 Sobic.001G371600 - -
18 Sobic.005G082300 - -
19 Sobic.007G172100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@vignain precursor, putative, expressed K16292: CEP, KDEL-tailed cysteine endopeptidase
20 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7


Gene co-expression network
sample Sobic006G146200 Sobic006G146200 Sobic001G417600 Sobic001G417600 Sobic006G146200--Sobic001G417600 Sobic007G126000 Sobic007G126000 Sobic006G146200--Sobic007G126000 Sobic001G278700 Sobic001G278700 Sobic006G146200--Sobic001G278700 Sobic006G139000 Sobic006G139000 Sobic006G146200--Sobic006G139000 Sobic005G083280 Sobic005G083280 Sobic006G146200--Sobic005G083280 Sobic004G322901 Sobic004G322901 Sobic006G146200--Sobic004G322901 Sobic006G015800 Sobic006G015800 Sobic006G146200--Sobic006G015800 Sobic006G018751 Sobic006G018751 Sobic006G146200--Sobic006G018751 Sobic005G033400 Sobic005G033400 Sobic006G146200--Sobic005G033400 Sobic010G133700 Sobic010G133700 Sobic001G417600--Sobic010G133700 Sobic001G417600--Sobic006G139000 Sobic001G280000 Sobic001G280000 Sobic001G417600--Sobic001G280000 Sobic003G036700 Sobic003G036700 Sobic001G417600--Sobic003G036700 Sobic001G082500 Sobic001G082500 Sobic001G417600--Sobic001G082500 Sobic009G208500 Sobic009G208500 Sobic001G417600--Sobic009G208500 Sobic006G147400 Sobic006G147400 Sobic001G417600--Sobic006G147400 Sobic007G178100 Sobic007G178100 Sobic001G417600--Sobic007G178100 Sobic007G194800 Sobic007G194800 Sobic001G417600--Sobic007G194800 Sobic010G207900 Sobic010G207900 Sobic007G126000--Sobic010G207900 Sobic007G126000--Sobic006G018751 Sobic007G126000--Sobic004G322901 Sobic009G056100 Sobic009G056100 Sobic007G126000--Sobic009G056100 Sobic007G126000--Sobic005G083280 Sobic002G286800 Sobic002G286800 Sobic007G126000--Sobic002G286800 Sobic007G086701 Sobic007G086701 Sobic007G126000--Sobic007G086701 Sobic009G202200 Sobic009G202200 Sobic007G126000--Sobic009G202200 Sobic001G371600 Sobic001G371600 Sobic007G126000--Sobic001G371600 Sobic004G075700 Sobic004G075700 Sobic001G278700--Sobic004G075700 Sobic001G278700--Sobic006G015800 Sobic010G273800 Sobic010G273800 Sobic001G278700--Sobic010G273800 Sobic002G354800 Sobic002G354800 Sobic001G278700--Sobic002G354800 Sobic007G150700 Sobic007G150700 Sobic001G278700--Sobic007G150700 Sobic002G230400 Sobic002G230400 Sobic001G278700--Sobic002G230400 Sobic003G055200 Sobic003G055200 Sobic001G278700--Sobic003G055200 Sobic004G163700 Sobic004G163700 Sobic001G278700--Sobic004G163700 Sobic006G161300 Sobic006G161300 Sobic001G278700--Sobic006G161300 Sobic002G058500 Sobic002G058500 Sobic006G139000--Sobic002G058500 Sobic006G139000--Sobic001G417600 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic009G055600 Sobic009G055600 Sobic006G139000--Sobic009G055600 Sobic001G261529 Sobic001G261529 Sobic005G083280--Sobic001G261529 Sobic005G083280--Sobic004G322901 Sobic003G092600 Sobic003G092600 Sobic005G083280--Sobic003G092600 Sobic002G015800 Sobic002G015800 Sobic005G083280--Sobic002G015800 Sobic001G264600 Sobic001G264600 Sobic005G083280--Sobic001G264600 Sobic005G083280--Sobic006G018751 Sobic005G083280--Sobic006G015800 Sobic005G083280--Sobic007G086701 Sobic009G014900 Sobic009G014900 Sobic005G083280--Sobic009G014900 Sobic004G322901--Sobic005G083280 Sobic004G322901--Sobic001G261529 Sobic004G322901--Sobic003G092600 Sobic004G322901--Sobic009G014900 Sobic004G322901--Sobic006G015800 Sobic004G322901--Sobic007G126000 Sobic002G147466 Sobic002G147466 Sobic004G322901--Sobic002G147466 Sobic004G322901--Sobic006G018751 Sobic004G322901--Sobic002G015800 Sobic006G015800--Sobic003G092600 Sobic004G212350 Sobic004G212350 Sobic006G015800--Sobic004G212350 Sobic005G082300 Sobic005G082300 Sobic006G015800--Sobic005G082300 Sobic002G172200 Sobic002G172200 Sobic006G015800--Sobic002G172200 Sobic002G100000 Sobic002G100000 Sobic006G015800--Sobic002G100000 Sobic006G015800--Sobic004G322901 Sobic006G015800--Sobic001G371600 Sobic005G032500 Sobic005G032500 Sobic006G015800--Sobic005G032500 Sobic001G489075 Sobic001G489075 Sobic006G015800--Sobic001G489075 Sobic006G018751--Sobic007G086701 Sobic006G018751--Sobic010G207900 Sobic006G018751--Sobic001G264600 Sobic006G018751--Sobic001G261529 Sobic006G018751--Sobic005G083280 Sobic006G018751--Sobic007G126000 Sobic006G018751--Sobic004G322901 Sobic002G266600 Sobic002G266600 Sobic006G018751--Sobic002G266600 Sobic002G066700 Sobic002G066700 Sobic006G018751--Sobic002G066700 Sobic006G081400 Sobic006G081400 Sobic005G033400--Sobic006G081400 Sobic009G057100 Sobic009G057100 Sobic005G033400--Sobic009G057100 Sobic004G071100 Sobic004G071100 Sobic005G033400--Sobic004G071100 Sobic005G185400 Sobic005G185400 Sobic005G033400--Sobic005G185400 Sobic005G188800 Sobic005G188800 Sobic005G033400--Sobic005G188800 Sobic005G147500 Sobic005G147500 Sobic005G033400--Sobic005G147500 Sobic004G029800 Sobic004G029800 Sobic005G033400--Sobic004G029800 Sobic005G184500 Sobic005G184500 Sobic005G033400--Sobic005G184500 Sobic010G031400 Sobic010G031400 Sobic005G033400--Sobic010G031400
Octagon: transcription factors


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