Gene annotation
Transcriptome id Sobic.001G039900.1
Synonym Sb01g003680
Functional annotation KH domain containing protein, putative, expressed
UniProt C5WV64
Pfam PF00013 PF16544
Panther DB PTHR11208 PTHR11208:SF42
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K14945; protein quaking
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G38610 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os03g60110.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016462 , Zm00025a008745
Brachypodium PNT73914 , PNT73915
Barley HORVU5Hr1G111540.5 , HORVU5Hr1G111540.4 , HORVU5Hr1G111540.3 , HORVU5Hr1G111540.2 , HORVU5Hr1G111540.1
Wheat TraesCS5A02G468700 , TraesCS5D02G481600 , TraesCS5B02G481200
Populus -


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cDNA sequences
Sobic.001G039900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G392900 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
2 Sobic.010G089400 TLD family protein, putative, expressed -
3 Sobic.004G317300 "O1(Ortholog in maize:Wang et al., 2012)"(PubMedID : 31659891)@XI-I, putative, expressed K10357: myosin V
4 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
5 Sobic.006G096900 expressed protein -
6 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
7 Sobic.008G002300 ATSIZ1/SIZ1, putative, expressed -
8 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
9 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
10 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
11 Sobic.010G027900 - -
12 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
13 Sobic.007G146100 formin, putative, expressed -
14 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
15 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
16 Sobic.002G029100 GYF domain containing protein, putative, expressed -
17 Sobic.010G236300 "domain confirmed by Pfam database, expressed in root, expression induced BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
18 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
19 Sobic.001G208700 ATTIC110/TIC110, putative, expressed -
20 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50


Gene co-expression network
sample Sobic001G039900 Sobic001G039900 Sobic003G392900 Sobic003G392900 Sobic001G039900--Sobic003G392900 Sobic010G089400 Sobic010G089400 Sobic001G039900--Sobic010G089400 Sobic004G317300 Sobic004G317300 Sobic001G039900--Sobic004G317300 Sobic005G100700 Sobic005G100700 Sobic001G039900--Sobic005G100700 Sobic006G096900 Sobic006G096900 Sobic001G039900--Sobic006G096900 Sobic004G353000 Sobic004G353000 Sobic001G039900--Sobic004G353000 Sobic008G002300 Sobic008G002300 Sobic001G039900--Sobic008G002300 Sobic006G056700 Sobic006G056700 Sobic001G039900--Sobic006G056700 Sobic002G256700 Sobic002G256700 Sobic001G039900--Sobic002G256700 Sobic002G325300 Sobic002G325300 Sobic003G392900--Sobic002G325300 Sobic001G370900 Sobic001G370900 Sobic003G392900--Sobic001G370900 Sobic009G255700 Sobic009G255700 Sobic003G392900--Sobic009G255700 Sobic003G418100 Sobic003G418100 Sobic003G392900--Sobic003G418100 Sobic008G001200 Sobic008G001200 Sobic003G392900--Sobic008G001200 Sobic001G305600 Sobic001G305600 Sobic003G392900--Sobic001G305600 Sobic003G247500 Sobic003G247500 Sobic003G392900--Sobic003G247500 Sobic006G126500 Sobic006G126500 Sobic003G392900--Sobic006G126500 Sobic001G375100 Sobic001G375100 Sobic003G392900--Sobic001G375100 Sobic010G089400--Sobic005G100700 Sobic010G021500 Sobic010G021500 Sobic010G089400--Sobic010G021500 Sobic010G089400--Sobic006G096900 Sobic002G211800 Sobic002G211800 Sobic010G089400--Sobic002G211800 Sobic010G086600 Sobic010G086600 Sobic010G089400--Sobic010G086600 Sobic010G226000 Sobic010G226000 Sobic010G089400--Sobic010G226000 Sobic003G362600 Sobic003G362600 Sobic010G089400--Sobic003G362600 Sobic004G311400 Sobic004G311400 Sobic010G089400--Sobic004G311400 Sobic007G159900 Sobic007G159900 Sobic010G089400--Sobic007G159900 Sobic004G317300--Sobic005G100700 Sobic002G029100 Sobic002G029100 Sobic004G317300--Sobic002G029100 Sobic003G214600 Sobic003G214600 Sobic004G317300--Sobic003G214600 Sobic006G019300 Sobic006G019300 Sobic004G317300--Sobic006G019300 Sobic003G388100 Sobic003G388100 Sobic004G317300--Sobic003G388100 Sobic001G277900 Sobic001G277900 Sobic004G317300--Sobic001G277900 Sobic004G317300--Sobic010G089400 Sobic006G169800 Sobic006G169800 Sobic004G317300--Sobic006G169800 Sobic003G360400 Sobic003G360400 Sobic004G317300--Sobic003G360400 Sobic005G100700--Sobic003G360400 Sobic002G344000 Sobic002G344000 Sobic005G100700--Sobic002G344000 Sobic005G100700--Sobic007G159900 Sobic003G389200 Sobic003G389200 Sobic005G100700--Sobic003G389200 Sobic008G113100 Sobic008G113100 Sobic005G100700--Sobic008G113100 Sobic007G146100 Sobic007G146100 Sobic005G100700--Sobic007G146100 Sobic005G100700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic005G100700--Sobic001G456300 Sobic010G112100 Sobic010G112100 Sobic005G100700--Sobic010G112100 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G096900--Sobic006G056700 Sobic001G433800 Sobic001G433800 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic002G371700 Sobic002G371700 Sobic004G353000--Sobic002G371700 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800 Sobic007G000200 Sobic007G000200 Sobic008G002300--Sobic007G000200 Sobic001G542450 Sobic001G542450 Sobic008G002300--Sobic001G542450 Sobic006G088200 Sobic006G088200 Sobic008G002300--Sobic006G088200 Sobic001G178300 Sobic001G178300 Sobic008G002300--Sobic001G178300 Sobic006G032300 Sobic006G032300 Sobic008G002300--Sobic006G032300 Sobic008G002300--Sobic002G029100 Sobic008G002300--Sobic002G256700 Sobic002G245000 Sobic002G245000 Sobic008G002300--Sobic002G245000 Sobic001G493700 Sobic001G493700 Sobic008G002300--Sobic001G493700 Sobic006G056700--Sobic006G096900 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic003G104000 Sobic003G104000 Sobic002G256700--Sobic003G104000 Sobic002G256700--Sobic001G493700 Sobic007G054800 Sobic007G054800 Sobic002G256700--Sobic007G054800 Sobic001G251100 Sobic001G251100 Sobic002G256700--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic002G256700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G133300 Sobic002G133300 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200
Octagon: transcription factors


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