Gene annotation
Transcriptome id Sobic.004G333800.2
Synonym Sb04g036220
Functional annotation ribosomal RNA large subunit methyltransferase J, putative, expressed
UniProt C5XV27
Pfam PF01728
Panther DB PTHR10920 PTHR10920:SF12
NCBI CDD KOG1099; SAM-dependent methyltransferase/cell division protein FtsJ
KEGG Orthology K14864; FTSJ1, tRNA (cytidine32/guanosine34-2'-O)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0001510RNA methylation


Orthologs (automatic annotation)
TAIR AT5G01230 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os06g49140.1 : ribosomal RNA large subunit methyltransferase J, putative, expressed
MaizeGDB (Corn) Zm00025a022505
Brachypodium KQK17454
Barley HORVU7Hr1G096170.2 , HORVU7Hr1G096170.3 , HORVU7Hr1G096170.1 , HORVU7Hr1G096170.6 , HORVU7Hr1G096170.7 , HORVU7Hr1G096170.5 , HORVU7Hr1G096170.8 , HORVU7Hr1G096170.4 , HORVU7Hr1G096170.9
Wheat TraesCS7B02G314100 , TraesCS7A02G414100
Populus -


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cDNA sequences
Sobic.004G333800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
2 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
3 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
4 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
5 Sobic.001G067400 arv1, putative, expressed -
6 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
7 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
8 Sobic.003G178900 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed -
9 Sobic.007G077400 dehydrogenase, putative, expressed K07512: MECR, mitochondrial enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase
10 Sobic.004G332400 neurochondrin family protein, putative, expressed -
11 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
12 Sobic.004G356800 OsRR3 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
13 Sobic.002G009200 - K15456: protein KTI12
14 Sobic.006G235700 programmed cell death 2 C-terminal domain-containing protein, putative, expressed K14801: pre-rRNA-processing protein TSR4
15 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
16 Sobic.002G361400 frigida, putative, expressed -
17 Sobic.003G241100 expressed protein K07765: S2P endopeptidase
18 Sobic.008G016100 WD domain, G-beta repeat domain containing protein, expressed K14848: RRB1, ribosome assembly protein RRB1
19 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
20 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic004G333800 Sobic004G333800 Sobic002G059300 Sobic002G059300 Sobic004G333800--Sobic002G059300 Sobic009G138700 Sobic009G138700 Sobic004G333800--Sobic009G138700 Sobic009G143800 Sobic009G143800 Sobic004G333800--Sobic009G143800 Sobic001G522600 Sobic001G522600 Sobic004G333800--Sobic001G522600 Sobic001G067400 Sobic001G067400 Sobic004G333800--Sobic001G067400 Sobic009G123600 Sobic009G123600 Sobic004G333800--Sobic009G123600 Sobic004G202500 Sobic004G202500 Sobic004G333800--Sobic004G202500 Sobic003G178900 Sobic003G178900 Sobic004G333800--Sobic003G178900 Sobic007G077400 Sobic007G077400 Sobic004G333800--Sobic007G077400 Sobic002G059300--Sobic009G123600 Sobic001G121200 Sobic001G121200 Sobic002G059300--Sobic001G121200 Sobic002G059300--Sobic001G067400 Sobic009G056200 Sobic009G056200 Sobic002G059300--Sobic009G056200 Sobic004G206700 Sobic004G206700 Sobic002G059300--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic002G059300--Sobic004G348300 Sobic002G347000 Sobic002G347000 Sobic002G059300--Sobic002G347000 Sobic010G027600 Sobic010G027600 Sobic002G059300--Sobic010G027600 Sobic006G199200 Sobic006G199200 Sobic002G059300--Sobic006G199200 Sobic007G039400 Sobic007G039400 Sobic009G138700--Sobic007G039400 Sobic008G160000 Sobic008G160000 Sobic009G138700--Sobic008G160000 Sobic001G259000 Sobic001G259000 Sobic009G138700--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic009G138700--Sobic003G382500 Sobic002G406600 Sobic002G406600 Sobic009G138700--Sobic002G406600 Sobic009G138700--Sobic003G178900 Sobic006G235700 Sobic006G235700 Sobic009G138700--Sobic006G235700 Sobic006G135900 Sobic006G135900 Sobic009G138700--Sobic006G135900 Sobic009G138700--Sobic009G143800 Sobic004G353000 Sobic004G353000 Sobic009G143800--Sobic004G353000 Sobic009G143800--Sobic001G259000 Sobic004G332400 Sobic004G332400 Sobic009G143800--Sobic004G332400 Sobic008G014500 Sobic008G014500 Sobic009G143800--Sobic008G014500 Sobic010G118000 Sobic010G118000 Sobic009G143800--Sobic010G118000 Sobic006G200700 Sobic006G200700 Sobic009G143800--Sobic006G200700 Sobic008G147200 Sobic008G147200 Sobic009G143800--Sobic008G147200 Sobic008G131000 Sobic008G131000 Sobic009G143800--Sobic008G131000 Sobic001G291800 Sobic001G291800 Sobic009G143800--Sobic001G291800 Sobic007G061000 Sobic007G061000 Sobic001G522600--Sobic007G061000 Sobic001G392300 Sobic001G392300 Sobic001G522600--Sobic001G392300 Sobic008G002500 Sobic008G002500 Sobic001G522600--Sobic008G002500 Sobic010G236400 Sobic010G236400 Sobic001G522600--Sobic010G236400 Sobic009G095100 Sobic009G095100 Sobic001G522600--Sobic009G095100 Sobic001G522600--Sobic008G014500 Sobic001G522600--Sobic006G200700 Sobic009G044800 Sobic009G044800 Sobic001G522600--Sobic009G044800 Sobic007G183900 Sobic007G183900 Sobic001G522600--Sobic007G183900 Sobic001G067400--Sobic002G059300 Sobic007G167900 Sobic007G167900 Sobic001G067400--Sobic007G167900 Sobic006G101700 Sobic006G101700 Sobic001G067400--Sobic006G101700 Sobic001G067400--Sobic004G206700 Sobic001G085100 Sobic001G085100 Sobic001G067400--Sobic001G085100 Sobic006G180000 Sobic006G180000 Sobic001G067400--Sobic006G180000 Sobic004G092500 Sobic004G092500 Sobic001G067400--Sobic004G092500 Sobic010G130000 Sobic010G130000 Sobic001G067400--Sobic010G130000 Sobic001G067400--Sobic009G123600 Sobic009G123600--Sobic002G059300 Sobic009G222500 Sobic009G222500 Sobic009G123600--Sobic009G222500 Sobic009G123600--Sobic001G085100 Sobic003G099100 Sobic003G099100 Sobic009G123600--Sobic003G099100 Sobic001G199100 Sobic001G199100 Sobic009G123600--Sobic001G199100 Sobic001G512300 Sobic001G512300 Sobic009G123600--Sobic001G512300 Sobic009G123600--Sobic004G206700 Sobic003G012200 Sobic003G012200 Sobic009G123600--Sobic003G012200 Sobic007G166100 Sobic007G166100 Sobic009G123600--Sobic007G166100 Sobic004G066200 Sobic004G066200 Sobic004G202500--Sobic004G066200 Sobic010G278200 Sobic010G278200 Sobic004G202500--Sobic010G278200 Sobic004G202500--Sobic003G099100 Sobic008G124900 Sobic008G124900 Sobic004G202500--Sobic008G124900 Sobic001G193300 Sobic001G193300 Sobic004G202500--Sobic001G193300 Sobic004G202500--Sobic006G101700 Sobic001G007000 Sobic001G007000 Sobic004G202500--Sobic001G007000 Sobic007G093800 Sobic007G093800 Sobic004G202500--Sobic007G093800 Sobic004G202500--Sobic010G130000 Sobic004G356900 Sobic004G356900 Sobic003G178900--Sobic004G356900 Sobic001G082100 Sobic001G082100 Sobic003G178900--Sobic001G082100 Sobic003G178900--Sobic009G138700 Sobic006G044600 Sobic006G044600 Sobic003G178900--Sobic006G044600 Sobic010G209000 Sobic010G209000 Sobic003G178900--Sobic010G209000 Sobic002G394600 Sobic002G394600 Sobic003G178900--Sobic002G394600 Sobic004G232800 Sobic004G232800 Sobic003G178900--Sobic004G232800 Sobic001G360200 Sobic001G360200 Sobic003G178900--Sobic001G360200 Sobic009G192000 Sobic009G192000 Sobic003G178900--Sobic009G192000 Sobic007G184500 Sobic007G184500 Sobic007G077400--Sobic007G184500 Sobic006G182200 Sobic006G182200 Sobic007G077400--Sobic006G182200 Sobic001G033500 Sobic001G033500 Sobic007G077400--Sobic001G033500 Sobic003G051200 Sobic003G051200 Sobic007G077400--Sobic003G051200 Sobic007G077400--Sobic004G353000 Sobic002G418700 Sobic002G418700 Sobic007G077400--Sobic002G418700 Sobic001G323000 Sobic001G323000 Sobic007G077400--Sobic001G323000 Sobic007G077400--Sobic010G130000 Sobic001G466700 Sobic001G466700 Sobic007G077400--Sobic001G466700
Octagon: transcription factors


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