Gene annotation
Transcriptome id Sobic.010G017900.1
Synonym Sb10g001730, EDA7
Functional annotation NUC153 domain containing protein, expressed
UniProt C5Z379
Pfam PF08159
Panther DB PTHR14927 PTHR14927:SF0
NCBI CDD -
KEGG Orthology K14788; NOL10, ribosome biogenesis protein ENP2
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT3G56990 : embryo sac development arrest 7
RAP-DB (Rice) LOC_Os06g03780.1 : NUC153 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050207 , Zm00025a049644
Brachypodium KQK19650
Barley HORVU7Hr1G011100.2 , HORVU7Hr1G011100.3 , HORVU7Hr1G011100.1
Wheat TraesCS4A02G429300 , TraesCS7D02G054600 , TraesCS7A02G060100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G017900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
2 Sobic.006G221600 expressed protein K14861: nucleolar pre-ribosomal-associated protein 1
3 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
4 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
5 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
6 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
7 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
8 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
9 Sobic.002G071400 S1 RNA binding domain containing protein, expressed K14792: RRP5, rRNA biogenesis protein RRP5
10 Sobic.001G335300 NOC3 - Putative nucleolar complex subunit 3, expressed K14834: nucleolar complex protein 3
11 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
12 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
13 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
14 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
15 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
16 Sobic.010G114900 expressed protein -
17 Sobic.002G373950 - -
18 Sobic.003G014700 pentatricopeptide, putative, expressed -
19 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
20 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase


Gene co-expression network
sample Sobic010G017900 Sobic010G017900 Sobic006G086600 Sobic006G086600 Sobic010G017900--Sobic006G086600 Sobic006G221600 Sobic006G221600 Sobic010G017900--Sobic006G221600 Sobic010G003400 Sobic010G003400 Sobic010G017900--Sobic010G003400 Sobic004G027500 Sobic004G027500 Sobic010G017900--Sobic004G027500 Sobic009G101200 Sobic009G101200 Sobic010G017900--Sobic009G101200 Sobic007G077900 Sobic007G077900 Sobic010G017900--Sobic007G077900 Sobic009G246500 Sobic009G246500 Sobic010G017900--Sobic009G246500 Sobic001G453400 Sobic001G453400 Sobic010G017900--Sobic001G453400 Sobic002G071400 Sobic002G071400 Sobic010G017900--Sobic002G071400 Sobic006G086600--Sobic010G003400 Sobic001G145400 Sobic001G145400 Sobic006G086600--Sobic001G145400 Sobic001G089600 Sobic001G089600 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic004G320500 Sobic004G320500 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic009G217200 Sobic009G217200 Sobic006G221600--Sobic009G217200 Sobic006G221600--Sobic002G071400 Sobic010G114900 Sobic010G114900 Sobic006G221600--Sobic010G114900 Sobic008G049100 Sobic008G049100 Sobic006G221600--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic006G221600--Sobic003G199300 Sobic002G234300 Sobic002G234300 Sobic006G221600--Sobic002G234300 Sobic006G221600--Sobic010G017900 Sobic010G205900 Sobic010G205900 Sobic006G221600--Sobic010G205900 Sobic007G056200 Sobic007G056200 Sobic006G221600--Sobic007G056200 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic001G052400 Sobic001G052400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic010G003400--Sobic004G320500 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic007G106700 Sobic007G106700 Sobic004G027500--Sobic007G106700 Sobic003G275600 Sobic003G275600 Sobic004G027500--Sobic003G275600 Sobic004G027500--Sobic010G017900 Sobic002G378100 Sobic002G378100 Sobic004G027500--Sobic002G378100 Sobic004G027500--Sobic002G071400 Sobic003G014700 Sobic003G014700 Sobic004G027500--Sobic003G014700 Sobic010G206300 Sobic010G206300 Sobic004G027500--Sobic010G206300 Sobic001G501400 Sobic001G501400 Sobic004G027500--Sobic001G501400 Sobic003G123200 Sobic003G123200 Sobic004G027500--Sobic003G123200 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic004G085000 Sobic004G085000 Sobic009G101200--Sobic004G085000 Sobic009G101200--Sobic001G052400 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic006G049600 Sobic006G049600 Sobic009G101200--Sobic006G049600 Sobic003G312100 Sobic003G312100 Sobic007G077900--Sobic003G312100 Sobic007G077900--Sobic010G114900 Sobic010G148932 Sobic010G148932 Sobic007G077900--Sobic010G148932 Sobic007G077900--Sobic001G453400 Sobic002G405500 Sobic002G405500 Sobic007G077900--Sobic002G405500 Sobic001G137000 Sobic001G137000 Sobic007G077900--Sobic001G137000 Sobic003G294600 Sobic003G294600 Sobic007G077900--Sobic003G294600 Sobic007G077900--Sobic010G003400 Sobic002G396500 Sobic002G396500 Sobic007G077900--Sobic002G396500 Sobic009G246500--Sobic008G049100 Sobic009G246500--Sobic010G205900 Sobic009G246500--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic004G224600 Sobic004G224600 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic006G125900 Sobic006G125900 Sobic001G453400--Sobic006G125900 Sobic001G453400--Sobic007G106700 Sobic001G453400--Sobic010G114900 Sobic002G071400--Sobic008G049100 Sobic002G071400--Sobic003G199300 Sobic002G071400--Sobic002G234300 Sobic002G071400--Sobic010G205900 Sobic002G071400--Sobic009G246500 Sobic002G071400--Sobic006G221600 Sobic009G173600 Sobic009G173600 Sobic002G071400--Sobic009G173600 Sobic002G071400--Sobic003G123200 Sobic002G071400--Sobic004G085000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.