Gene annotation
Transcriptome id Sobic.001G007900.1
Synonym Sb01g000790
Functional annotation BCCIP, putative, expressed
UniProt C5WS05
Pfam PF13862
Panther DB PTHR13261
NCBI CDD -
KEGG Orthology K15262; BCP1, protein BCP1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44510 : CDK inhibitor P21 binding protein
RAP-DB (Rice) LOC_Os03g63690.1 : BCCIP, putative, expressed
MaizeGDB (Corn) Zm00025a016313
Brachypodium KQK12019 , KQK12020 , KQK12021
Barley HORVU5Hr1G123490.4 , HORVU5Hr1G123490.5 , HORVU5Hr1G123490.6 , HORVU5Hr1G123490.7 , HORVU5Hr1G123490.1 , HORVU5Hr1G123490.2 , HORVU5Hr1G123490.3 , HORVU5Hr1G123490.8
Wheat TraesCS5B02G554400 , TraesCS4A02G324000 , TraesCS5D02G554400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G007900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
2 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
3 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B
4 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
5 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
6 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
7 Sobic.001G221500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
8 Sobic.009G249800 AARP2CN domain containing protein, expressed K14799: pre-rRNA-processing protein TSR1
9 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
10 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
11 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
12 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
13 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
14 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
15 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
16 Sobic.002G086200 - -
17 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
18 Sobic.001G103900 signal peptide peptidase domain containing protein, expressed -
19 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
20 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4


Gene co-expression network
sample Sobic001G007900 Sobic001G007900 Sobic010G247400 Sobic010G247400 Sobic001G007900--Sobic010G247400 Sobic002G341800 Sobic002G341800 Sobic001G007900--Sobic002G341800 Sobic006G280600 Sobic006G280600 Sobic001G007900--Sobic006G280600 Sobic001G259000 Sobic001G259000 Sobic001G007900--Sobic001G259000 Sobic009G235000 Sobic009G235000 Sobic001G007900--Sobic009G235000 Sobic001G017700 Sobic001G017700 Sobic001G007900--Sobic001G017700 Sobic001G221500 Sobic001G221500 Sobic001G007900--Sobic001G221500 Sobic009G249800 Sobic009G249800 Sobic001G007900--Sobic009G249800 Sobic002G014400 Sobic002G014400 Sobic001G007900--Sobic002G014400 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic005G168600 Sobic005G168600 Sobic006G280600--Sobic005G168600 Sobic004G356900 Sobic004G356900 Sobic006G280600--Sobic004G356900 Sobic001G263000 Sobic001G263000 Sobic006G280600--Sobic001G263000 Sobic001G085100 Sobic001G085100 Sobic006G280600--Sobic001G085100 Sobic004G232800 Sobic004G232800 Sobic006G280600--Sobic004G232800 Sobic003G239800 Sobic003G239800 Sobic006G280600--Sobic003G239800 Sobic007G188300 Sobic007G188300 Sobic006G280600--Sobic007G188300 Sobic001G078800 Sobic001G078800 Sobic006G280600--Sobic001G078800 Sobic009G238850 Sobic009G238850 Sobic006G280600--Sobic009G238850 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic004G252000 Sobic004G252000 Sobic009G235000--Sobic004G252000 Sobic001G007800 Sobic001G007800 Sobic009G235000--Sobic001G007800 Sobic006G135900 Sobic006G135900 Sobic009G235000--Sobic006G135900 Sobic009G235000--Sobic008G160000 Sobic009G235000--Sobic009G249800 Sobic006G142400 Sobic006G142400 Sobic009G235000--Sobic006G142400 Sobic009G235000--Sobic001G017700 Sobic002G423500 Sobic002G423500 Sobic009G235000--Sobic002G423500 Sobic001G251600 Sobic001G251600 Sobic009G235000--Sobic001G251600 Sobic001G017700--Sobic001G145400 Sobic006G208500 Sobic006G208500 Sobic001G017700--Sobic006G208500 Sobic006G086600 Sobic006G086600 Sobic001G017700--Sobic006G086600 Sobic006G136400 Sobic006G136400 Sobic001G017700--Sobic006G136400 Sobic003G057700 Sobic003G057700 Sobic001G017700--Sobic003G057700 Sobic003G287100 Sobic003G287100 Sobic001G017700--Sobic003G287100 Sobic008G009600 Sobic008G009600 Sobic001G017700--Sobic008G009600 Sobic001G017700--Sobic009G101200 Sobic003G300300 Sobic003G300300 Sobic001G017700--Sobic003G300300 Sobic003G366500 Sobic003G366500 Sobic001G221500--Sobic003G366500 Sobic006G182200 Sobic006G182200 Sobic001G221500--Sobic006G182200 Sobic001G360200 Sobic001G360200 Sobic001G221500--Sobic001G360200 Sobic010G209000 Sobic010G209000 Sobic001G221500--Sobic010G209000 Sobic009G175300 Sobic009G175300 Sobic001G221500--Sobic009G175300 Sobic007G180100 Sobic007G180100 Sobic001G221500--Sobic007G180100 Sobic001G221500--Sobic004G356900 Sobic006G200600 Sobic006G200600 Sobic001G221500--Sobic006G200600 Sobic001G221500--Sobic007G039400 Sobic002G408900 Sobic002G408900 Sobic009G249800--Sobic002G408900 Sobic004G208500 Sobic004G208500 Sobic009G249800--Sobic004G208500 Sobic009G249800--Sobic001G251600 Sobic002G246700 Sobic002G246700 Sobic009G249800--Sobic002G246700 Sobic002G295900 Sobic002G295900 Sobic009G249800--Sobic002G295900 Sobic006G010400 Sobic006G010400 Sobic009G249800--Sobic006G010400 Sobic001G015400 Sobic001G015400 Sobic009G249800--Sobic001G015400 Sobic001G460500 Sobic001G460500 Sobic009G249800--Sobic001G460500 Sobic004G256000 Sobic004G256000 Sobic009G249800--Sobic004G256000 Sobic004G047200 Sobic004G047200 Sobic002G014400--Sobic004G047200 Sobic004G326600 Sobic004G326600 Sobic002G014400--Sobic004G326600 Sobic002G014400--Sobic002G423500 Sobic005G163700 Sobic005G163700 Sobic002G014400--Sobic005G163700 Sobic002G014400--Sobic002G341800 Sobic002G014400--Sobic001G460500 Sobic002G014400--Sobic002G394600 Sobic002G014400--Sobic006G044600 Sobic002G014400--Sobic001G251600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.